Chromophorylation of apoproteins in each strain
[click here to see only marine picocyanobacteria]
This table lists the position of the cysteinyl binding sites (a consensus numbering is used for allophycocyanin, phycocyanin and phycoerythrin I; see Sidler, 1994) and chromophorylation for the different phycobiliproteins (present in the strains listed in the genome page or only the marine Synechococcus/Cyanobium/Prochlorococcus). The identity of chromophores at any given position was either determined biochemically (Ong and Glazer 1991, Shukla et al. in revision) or predicted by us, based on the presence of a specific set of phycobilin lyases in the genome and, in some cases, similar spectral characteristics of isolated phycobiliproteins as biochemically characterized ones (Six et al. 2007).
Abbreviations: PCB, phycocyanobilin; PEB, phycoerythrobilin; PUB, phycourobilin; PVB, phycoviolobilin; BL, blue light; GL, green light; PBP, phycobiliproteins
Biochemically determined pigmentations are indicated in bold. Other pigmentations are predictions.
Phycobiliprotein | Allophycocyanin | Phycocyanin | Phycoerythrocyanin | Phycoerythrin I | Phycoerythrin II | Phycoerythrin III | |||||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Apoprotein name | ApcA | ApcB | ApcD | ApcF | CpcA/RpcA | CpcB/RpcB | CpcB/RpcB | PecA | PecB | PecB | CpeA | CpeA | CpeB | CpeB | CpeB | MpeA | MpeA | MpeA | MpeB | MpeB | MpeB | PpeA | PpeB | PpeB | PpeB | ||
Consensus binding site | α-82 | β-82 | αB-82 | β18-82 | α-84 | β-84 | β-155 | α-84 | β-84 | β-155 | α-84 | a-143 | β-50/61 | β-84 | β-155 | α-75 | α-83 | α-140 | β-50/61 | β-82 | β-159 | α-73 | β-61 | β-82 | β-163 | ||
Species | Strain | PBP in rods | |||||||||||||||||||||||||
Synechococcus sp. |
PC+PEI+PEII |
PCB |
PCB |
PCB |
PCB |
PEB |
PCB |
PEB |
PEB |
PEB in GL PUB in BL |
PEB or PUB? |
PEB |
PEB |
PUB |
PEB in GL PUB in BL |
PEB in GL PUB in BL |
PUB |
PEB |
PEB |
||||||||
Synechococcus sp. |
PC+PEI+PEII |
PCB |
PCB |
PCB |
PCB |
PUB |
PCB |
PEB |
PEB |
PUB |
PUB |
PEB |
PEB |
PUB |
PUB |
PUB |
PUB |
PEB |
PEB |
||||||||
Synechococcus sp. |
PC+PEI+PEII |
PCB |
PCB |
PCB |
PCB |
PEB |
PCB |
PCB |
PEB |
PEB |
PEB or PUB? |
PEB |
PEB |
PEB or PUB? |
PEB |
PEB |
PEB or PUB? |
PEB |
PEB |
||||||||
Synechococcus sp. |
PC+PEI+PEII |
PCB |
PCB |
PCB |
PCB |
PUB |
PCB |
PEB |
PEB |
PUB |
PUB |
PEB |
PEB |
PUB |
PUB |
PUB |
PUB |
PEB |
PEB |
||||||||
Synechococcus sp. |
PC+PEI+PEII |
PCB |
PCB |
PCB |
PCB |
PEB |
PCB |
PEB |
PEB |
PEB in GL PUB in BL |
PEB or PUB? |
PEB |
PEB |
PUB |
PEB in GL PUB in BL |
PEB in GL PUB in BL |
PUB |
PEB |
PEB |
||||||||
Synechococcus sp. |
PC+PEI+PEII |
PCB |
PCB |
PCB |
PCB |
PUB |
PCB |
PEB |
PEB |
PEB in GL PUB in BL |
PEB or PUB? |
PEB |
PEB |
PUB |
PEB in GL PUB in BL |
PEB in GL PUB in BL |
PUB |
PEB |
PEB |
||||||||
Synechococcus sp. |
PC+PEI+PEII |
PCB |
PCB |
PCB |
PCB |
PEB |
PCB |
PEB |
PEB |
PEB |
PEB |
PEB |
PEB |
PEB or PUB? |
PEB |
PEB |
PEB or PUB? |
PEB |
PEB |
||||||||
Synechococcus sp. |
PC+PEI |
PCB |
PCB |
PCB |
PCB |
PEB |
PCB |
PCB |
PEB |
PEB |
PEB |
PEB |
PEB |
||||||||||||||
Synechococcus sp. |
PC |
PCB |
PCB |
PCB |
PCB |
PCB |
PCB |
PCB |
|||||||||||||||||||
Synechococcus sp. |
PC+PEI+PEII |
PCB |
PCB |
PCB |
PCB |
PUB |
PCB |
PEB or PCB? |
PEB |
PEB in GL PUB in BL |
PUB |
PEB |
PEB |
PUB |
PEB in GL PUB in BL |
PEB in GL PUB in BL |
PUB |
PEB |
PEB |
||||||||
Synechococcus sp. |
PC |
PCB |
PCB |
PCB |
PCB |
PCB |
PCB |
PCB |
|||||||||||||||||||
Synechococcus sp. |
PC+PEI+PEII |
PCB |
PCB |
PCB |
PCB |
PEB |
PCB |
PCB |
PEB |
PEB in GL PUB in BL |
PEB or PUB? |
PEB |
PEB |
PUB |
PEB |
PEB in GL PUB in BL |
PUB |
PEB |
PEB |
||||||||
Synechococcus sp. |
PC |
PCB |
PCB |
PCB |
PCB |
PCB |
PCB |
PCB |
|||||||||||||||||||
Synechococcus sp. |
PC+PEI |
PCB |
PCB |
PCB |
PCB |
PEB or PCB? |
PCB |
PCB |
PEB |
PEB |
PEB |
PEB |
PEB |
||||||||||||||
Synechococcus sp. |
PC+PEI |
PCB |
PCB |
PCB |
PCB |
PCB |
PCB |
PCB |
PEB |
PEB |
PEB |
PEB |
PEB |
||||||||||||||
Synechococcus sp. |
PC |
PCB |
PCB |
PCB |
PCB |
PCB |
PCB |
PCB |
|||||||||||||||||||
Cyanobium sp. |
PC |
PCB |
PCB |
PCB |
PCB |
PCB |
PCB |
PCB |
|||||||||||||||||||
Synechococcus sp. |
PC+PEI+PEII |
PCB |
PCB |
PCB |
PCB |
PEB |
PCB |
PEB |
PEB |
PEB |
PEB |
PEB |
PEB |
PEB or PUB? |
PEB |
PEB |
PEB or PUB? |
PEB |
PEB |
||||||||
Prochlorococcus marinus |
beta-PEIII |
PEB |
|||||||||||||||||||||||||
Prochlorococcus marinus |
beta-PEIII |
PEB |
|||||||||||||||||||||||||
Prochlorococcus marinus |
beta-PEIII |
PEB |
|||||||||||||||||||||||||
Prochlorococcus marinus |
beta-PEIII |
PEB |
|||||||||||||||||||||||||
Prochlorococcus marinus |
beta-PEIII |
PEB |
|||||||||||||||||||||||||
Prochlorococcus marinus |
beta-PEIII |
PEB |
|||||||||||||||||||||||||
Prochlorococcus marinus |
beta-PEIII |
PEB |
|||||||||||||||||||||||||
Prochlorococcus marinus |
PEIII |
PEB or PUB? |
PEB or PUB? |
PEB |
PEB |
||||||||||||||||||||||
Prochlorococcus marinus |
PEIII |
PEB or PUB? |
PEB or PUB? |
PEB |
PEB |
||||||||||||||||||||||
Prochlorococcus marinus |
PEIII |
PEB or PUB? |
PEB or PUB? |
PEB |
PEB |
||||||||||||||||||||||
Prochlorococcus marinus |
PEIII |
PEB or PUB? |
PEB or PUB? |
PEB |
PEB |
||||||||||||||||||||||
Prochlorococcus marinus |
beta-PEIII |
PEB |
|||||||||||||||||||||||||
Prochlorococcus sp. |
PEIII |
PEB or PUB? |
PEB or PUB? |
PEB |
PEB |
||||||||||||||||||||||
Prochlorococcus sp. |
PEIII |
PEB or PUB? |
PEB or PUB? |
PEB |
PEB |
||||||||||||||||||||||
Synechocystis sp. |
PC |
PCB |
PCB |
PCB |
PCB |
PCB |
PCB |
PCB |
|||||||||||||||||||
Acaryochloris marina |
PC |
PCB |
PCB |
PCB |
PCB |
PCB |
PCB |
PCB |
|||||||||||||||||||
Anabaena (Nostoc) sp. |
PC+PEC |
PCB |
PCB |
PCB |
PCB |
PCB |
PCB |
PCB |
PVB |
PCB |
PCB |
||||||||||||||||
Anabaena variabilis |
PC+PEC |
PCB |
PCB |
PCB |
PCB |
PCB |
PCB |
PCB |
PVB |
PCB |
PCB |
||||||||||||||||
Anabaena (Nostoc) azollae |
PC+PEC |
PCB |
PCB |
PCB |
PCB |
PCB |
PCB |
PCB |
PVB |
PCB |
PCB |
||||||||||||||||
Arthrospira (Spirulina) maxima |
PC |
PCB |
PCB |
PCB |
PCB |
PCB |
PCB |
PCB |
|||||||||||||||||||
Crocosphaera watsonii |
PC+PEI |
PCB |
PCB |
PCB |
PCB |
PUB |
PCB |
PCB |
PUB |
PUB |
PUB |
PEB |
PUB |
||||||||||||||
Cyanothece sp. |
PC |
PCB |
PCB |
PCB |
PCB |
PCB |
PCB |
PCB |
|||||||||||||||||||
Cyanothece sp. |
PC+PEI |
PCB |
PCB |
PCB |
PCB |
PCB |
PCB |
PCB |
PEB |
PEB |
PEB |
PCB |
PEB |
||||||||||||||
Cyanothece sp. |
PC |
PCB |
PCB |
PCB |
PCB |
PCB |
PCB |
PCB |
|||||||||||||||||||
Cyanothece sp. |
PC+PEI |
PCB |
PCB |
PCB |
PCB |
PCB |
PCB |
PCB |
PEB |
PEB |
PEB |
PEB |
PEB |
||||||||||||||
Cyanothece sp. |
PC |
PCB |
PCB |
PCB |
PCB |
PCB |
PCB |
PCB |
|||||||||||||||||||
Cyanothece sp. |
PC |
PCB |
PCB |
PCB |
PCB |
PCB |
PCB |
PCB |
|||||||||||||||||||
Cyanothece sp. |
PC+PEI |
PCB |
PCB |
PCB |
PCB |
PCB |
PCB |
PCB |
PEB |
PEB |
PEB |
PEB |
PEB |
||||||||||||||
Fremyella diplosiphon (Tolypothrix sp. / Calothrix sp.) |
PC+PEI |
PCB |
PCB |
PCB |
PCB |
PCB |
PCB |
PCB |
PEB |
PEB |
PEB |
PEB |
PEB |