WH8102 strain
[fasta] [gff] [only sure] [only unsure]
Lineage
- Prokarya
- Cyanobacteria
- Chroococcales
- Synechococcus
- sp.
Strain information
Subcluster: 5.1
Clade/Ecotype: III
Subclade: IIIa
Phycobiliprotein types: PC+PEI+PEII
Pigment type: 3c
Habitat: marine
Remark: Strain in which RpcG has been characterized (Blot et al., 2009)
Genome sequence
References
- Blot et al., 2009. Phycourobilin in Trichromatic Phycocyanin from Oceanic Cyanobacteria Is Formed Post-translationally by a Phycoerythrobilin Lyase-Isomerase J Biol Chem, 284, 9290-9298.
- Palenik et al., 2003. The genome of a motile marine Synechococcus Nature, 424, 1037-1042.
- Six et al., 2007. Diversity and evolution of phycobilisomes in marine Synechococcus spp.: a comparative genomics study Genome Biol, 8, R259.
| Gene | Locus tag | Genbank | Remark | Length | Last change |
|---|---|---|---|---|---|
| CpcS-II subfamily | SYNW0315 | NP_896410.1 | 198 | 09-26-2011 | |
| CpeT family | SYNW2003 | NP_898094.1 | 204 | 09-26-2011 | |
| CpeS-II subfamily | SYNW2002 | NP_898093.1 | 180 | 09-26-2011 | |
| CpeU-II subfamily | SYNW2019 | NP_898110.1 | 204 | 11-25-2011 | |
| CpeY family | SYNW2013 | NP_898104.1 | 441 | 09-26-2011 | |
| CpeZ family | SYNW2012 | NP_898103.1 | 206 | 09-26-2011 | |
| MpeU family | SYNW2011 | NP_898102.1 | 301 | 10-25-2011 | |
| MpeQ family | SYNW2007 | NP_898098.1 | 398 | 04-20-2023 | |
| RpcG family | SYNW2025 | NP_898116.1 | 466 | 09-26-2011 | |
| RpcT family | SYNW2024 | NP_898115.1 | 197 | 09-26-2011 | |
| IaiH family | SYNW0621 | NP_896714.1 | 269 | 10-26-2011 | |
| CotB homologs 1 family | SYNW0139 | NP_896234.1 | 205 | 09-26-2011 | |
| CpcU-II subfamily | SYNW1611 | NP_897704.1 | 154 | 11-04-2011 |
Model strains, Marine strains
Last update: 28 Aug 2012 14:17:59
