JSC-11 strain

[fasta] [gff] [only sure] [only unsure]

Lineage

Prokarya

Cyanobacteria

Stigonematales

Fischerella

sp. (Mastigocladus laminosus)

Strain information

Phycobiliprotein types: PC+PEC

Habitat: freshwater

Remark: Close to Fischerella sp. PCC 7603 in which CpcE/F (Zhao et al, 2006) as well as PecE and/or PecF (Storf et al. 2001, Zhao et al., 2005, Bohm et al, 2007) have been characterized

Genome sequence

Refseq record: NZ_AGIZ00000000

Genome status: incomplete (34 scaffolds)

Sequencing center: JGI

References

Bohm et al., 2007. Biliprotein chromophore attachment - Chaperone-like function of the PecE subunit of alpha-phycoerythrocyanin lyase J Biol Chem, 282, 25357-25366.
Storf et al., 2001. Chromophore attachment to biliproteins: specificity of PecE/PecF, a lyase-isomerase for the photoactive 3(1)-cys-alpha 84-phycoviolobilin chromophore of phycoerythrocyanin Biochemistry, 40, 12444-12456.
Zhao et al., 2006. Chromophore attachment in phycocyanin - Functional amino acids of phycocyanobilin-alpha-phycocyanin lyase and evidence for chromophore binding FEBS J, 273, 1262-1274.
Zhao et al., 2005. Amino acid residues associated with enzymatic activities of the isomerizing phycoviolobilin-lyase PecE/F Biochemistry, 44, 8126-8137.

Gene	Locus tag	Genbank	Length	Last change
CpcS-III subfamily	FJSC11DRAFT_1071	ZP_08984865.1	187	11-04-2011
CpcT family	FJSC11DRAFT_1806	ZP_08985600.1	196	11-04-2011
CpcV family	FJSC11DRAFT_2876	ZP_08986670.1	178	11-04-2011
PecE family	FJSC11DRAFT_0798	ZP_08984592.1	257	11-04-2011
PecF family	FJSC11DRAFT_0797	ZP_08984591.1	209	11-04-2011
IaiH family	FJSC11DRAFT_1220	ZP_08985014.1	252	11-04-2011
CotB homologs 2 family	FJSC11DRAFT_1072	ZP_08984866.1	226	11-04-2011
CpcE-I subfamily	FJSC11DRAFT_0792	ZP_08984586.1	276	12-06-2011
CpcF-I subfamily	FJSC11DRAFT_0791	ZP_08984585.1	205	12-06-2011
NblB family	FJSC11DRAFT_0382	ZP_08984176.1	221	11-24-2011
T homologs family	FJSC11DRAFT_4093	ZP_08987885.1	198	11-24-2011
L8106_16949 homologs family	FJSC11DRAFT_0884	ZP_08984678.1	404	12-05-2011
L8106_22089 homologs family	FJSC11DRAFT_4556	ZP_08988348.1	333	12-06-2011

Model strains, Marine strains

Last update: 05 Oct 2012 18:08:01