WH7805 strain
[fasta] [gff] [only sure] [only unsure]
Lineage
- Prokarya
- Cyanobacteria
- Chroococcales
- Synechococcus
- sp.
Strain information
Subcluster: 5.1
Clade/Ecotype: VI
Subclade: VIa
Phycobiliprotein types: PC+PEI
Pigment type: 2
Habitat: marine
Genome sequence
References
- Dufresne et al., 2008. Unraveling the genomic mosaic of a ubiquitous genus of marine cyanobacteria Genome Biol, 9, R90.
| Gene | Locus tag | Genbank | Remark | Length | Last change |
|---|---|---|---|---|---|
| CpcS-II subfamily | WH7805_11643 | ZP_01122710.1 | 196 | 09-26-2011 | |
| CpcT family | WH7805_06621 | ZP_01123324.1 | 213 | 09-26-2011 | |
| CpeT family | WH7805_06676 | ZP_01123335.1 | 203 | 09-26-2011 | |
| CpeS-II subfamily | WH7805_06671 | ZP_01123334.1 | 178 | 09-26-2011 | |
| CpeU-II subfamily | WH7805_06731 | ZP_01123346.1 | N-term extended (8 aa added) | 193 | 09-17-2012 |
| CpeY family | WH7805_06686 | ZP_01123337.1 | 427 | 09-26-2011 | |
| CpeZ family | WH7805_06706 | ZP_01123341.1 | 209 | 09-26-2011 | |
| CpeF family | WH7805_06701 | ZP_01123340.1 | 298 | 10-25-2011 | |
| IaiH family | WH7805_12348 | ZP_01122851.1 | 269 | 10-26-2011 | |
| CotB homologs 1 family | WH7805_08566 | ZP_01123713.1 | 208 | 09-26-2011 | |
| CpcE/RpcE family | WH7805_06756 | ZP_01123351.1 | The R-PC-III present in this strain has a PCB:PEB ratio of 2:1 (Sidler, 1994). It is unclear whether WH7805 has CpcE/F or RpcE/F but the presence of CpcT (and not RpcT) however argues for the following pigmentation: alpha-84=PEB; beta-84=PCB; beta-155=PCB. | 265 | 09-19-2012 |
| CpcF/RpcF family | WH7805_06761 | ZP_01123352.1 | Unclear whether this strain has CpcE/F or RpcE/F. Two possibilities: a-84 and b-84 = PCB; b-155 = PEB a-84 = PEB,b-84 and b-155 = PCB |
212 | 12-06-2011 |
| CpcU-II subfamily | WH7805_05516 | ZP_01124634.1 | N-term shortened (7 aa removed: MSCEDGS) | 153 | 09-16-2012 |
Model strains, Marine strains
Last update: 28 Aug 2012 14:18:46
