WH8020 strain
[fasta] [gff] [only sure] [only unsure]
Lineage
- Prokaryotes
- Cyanobacteria
- Chroococcales
- Synechococcus
- sp.
Strain information
Subcluster: 5.1
Clade/Ecotype: I
Subclade: Ia
Phycobiliprotein types: PC+PEI+PEII
Pigment type: 3dA/CA4-A
Habitat: marine
Remark: Genome sequenced but not yet public (A.F. Post, pers. comm.). Sequences reported here come either from the sequencing of a large part of the PBS gene region (Wilbanks et al. 1993) or extracted from the preliminary genome assemblage (but set still incomplete).
Genome sequence
Genome status: preliminary, incomplete draft
References
- Humily et al., 2013. A gene island with two possible configurations is involved in chromatic acclimation in marine Synechococcus PLoS One, 8, e84459.
- Mazard et al., 2012. Multi-locus sequence analysis, taxonomic resolution and biogeography of marine Synechococcus Environmental Microbiology, 14, 372–386.
- Ong et al., 1991. Phycoerythrins of marine unicellular cyanobacteria. I. Bilin types and locations and energy transfer pathways in Synechococcus spp. phycoerythrins J Biol Chem, 266, 9515-9527.
- Wilbanks et al., 1993. Rod structure of a phycoerythrin II-containing phycobilisome. I. Organization and sequence of the gene cluster encoding the major phycobiliprotein rod components in the genome of marine Synechococcus sp. WH8020 J Biol Chem, 268, 1226-1235.
| Gene | Locus tag | Genbank | Remark | Length | Last change |
|---|---|---|---|---|---|
| RpcF subfamily | SynWH8020_rpcF | AAA27349.1 | 209 | 08-26-2012 | |
| MpeV family | SynW8020_mpeV | AAA27339.1 | 301 | 04-20-2023 | |
| CpeY family | SynWH8020_cpeY | AAA27337.1 | N-term extended (23 aa added) | 442 | 08-27-2012 |
| MpeU family | SynWH8020_mpeU | AAA27335.1 | 297 | 08-26-2012 | |
| RpcE subfamily | SynWH8020_rpcE | AAA27348.1 | 265 | 08-26-2012 | |
| CpeZ family | SynWH8020_cpeZ | AAA27336.1 | N-term extended (22 aa added) | 208 | 08-27-2012 |
| RpcT family | SynWH8020_rpcT | AAA27347.1 | ORF196 in Wilbanks et al. (1993) | 196 | 08-27-2012 |
| CpeU-II subfamily | SynWH8020_CpeUII | AAA27342.1 | ORF200 in Wilbanks et al. (1993) | 200 | 08-27-2012 |
| CpcS-II subfamily | SynWH8020_CpcSII | From unpublished WH8020 genome | 203 | 08-27-2012 | |
| CpeS-II subfamily | SynWH8020_CpeSII | From unpublished WH8020 genome | 179 | 08-27-2012 |
Model strains, Marine strains
Last update: 19 Jan 2018 15:18:42
