PCC7116 strain
[fasta] [gff] [only sure] [only unsure]
Lineage
- Prokarya
- Cyanobacteria
- Nostocales
- Rivularia
- sp.
Strain information
Phycobiliprotein types: PC+PEC
Habitat: unknown
Remark: contains two plasmids
Genome sequence
References
- Shih et al., 2013. Improving the coverage of the cyanobacterial phylum using diversity-driven genome sequencing Proc Natl Acad Sci U S A, 110, 1053-1058.
| Gene | Locus tag | Genbank | Remark | Length | Last change |
|---|---|---|---|---|---|
| CpcS-III subfamily | Riv7116_2426 | YP_007055488.1 | 188 | 04-23-2013 | |
| CpcV family | Riv7116_0828 | YP_007053959.1 | 180 | 04-23-2013 | |
| CpcT family | Riv7116_4869 | YP_007057827.1 | 196 | 04-23-2013 | |
| CpcE-I subfamily | Riv7116_3561 | YP_007056560.1 | 275 | 04-23-2013 | |
| CpcF-I subfamily | Riv7116_3560 | YP_007056559.1 | 206 | 04-23-2013 | |
| PecF family | Riv7116_3566 | YP_007056565.1 | 174 | 04-23-2013 | |
| IaiH family | Riv7116_2387 | YP_007055450.1 | 252 | 04-24-2013 | |
| NblB family | Riv7116_0216 | YP_007053370.1 | 218 | 04-24-2013 | |
| T homologs family | Riv7116_2555 | YP_007055610.1 | 197 | 04-24-2013 | |
| L8106_16949 homologs family | Riv7116_0550 | YP_007053692.1 | 401 | 04-24-2013 | |
| L8106_22089 homologs family | Riv7116_5847 | YP_007058758.1 | 369 | 04-24-2013 | |
| CotB homologs 2 family | Riv7116_2427 | YP_007055489.1 | 227 | 04-24-2013 | |
| PecE family | Riv7116_3567 | Wrongly marked as pseudo gene in refseq | 256 | 06-20-2013 |
Model strains, Marine strains
Last update: 25 May 2013 8:28:19
