CC9902 strain
[fasta] [gff] [only sure] [only unsure]
Lineage
- Prokarya
- Cyanobacteria
- Chroococcales
- Synechococcus
- sp.
Strain information
Subcluster: 5.1
Clade/Ecotype: IV
Subclade: IVa
Phycobiliprotein types: PC+PEI+PEII
Pigment type: 3dA/CA4-A
Habitat: marine
Genome sequence
References
- Dufresne et al., 2008. Unraveling the genomic mosaic of a ubiquitous genus of marine cyanobacteria Genome Biol, 9, R90.
- Humily et al., 2013. A gene island with two possible configurations is involved in chromatic acclimation in marine Synechococcus PLoS One, 8, e84459.
- Six et al., 2007. Diversity and evolution of phycobilisomes in marine Synechococcus spp.: a comparative genomics study Genome Biol, 8, R259.
| Gene | Locus tag | Genbank | Remark | Length | Last change |
|---|---|---|---|---|---|
| CpcS-II subfamily | Syncc9902_0400 | YP_376414.1 | 198 | 09-26-2011 | |
| CpeT family | Syncc9902_1887 | YP_377888.1 | 204 | 09-26-2011 | |
| CpeS-II subfamily | Syncc9902_1886 | YP_377887.1 | 178 | 09-26-2011 | |
| CpeU-II subfamily | Syncc9902_1905 | YP_377906.1 | 205 | 11-25-2011 | |
| CpeY family | Syncc9902_1898 | YP_377899.1 | 441 | 09-26-2011 | |
| CpeZ family | Syncc9902_1897 | YP_377898.1 | 209 | 09-26-2011 | |
| MpeU family | Syncc9902_1896 | YP_377897.1 | 298 | 10-25-2011 | |
| MpeV family | Syncc9902_1901 | YP_377902.1 | 293 | 04-20-2023 | |
| MpeY family | Syncc9902_1892 | YP_377893.1 | 398 | 09-26-2011 | |
| MpeZ family | Syncc9902_1568 | YP_377570.1 | 409 | 09-26-2011 | |
| RpcT family | Syncc9902_1910 | YP_377911.1 | 200 | 09-26-2011 | |
| IaiH family | Syncc9902_0612 | YP_376624.1 | 270 | 10-26-2011 | |
| CotB homologs 1 family | Syncc9902_0166 | YP_376184.1 | 203 | 09-26-2011 | |
| RpcE subfamily | Syncc9902_1911 | YP_377912.1 | 256 | 09-26-2011 | |
| RpcF subfamily | Syncc9902_1912 | YP_377913.1 | 210 | 09-26-2011 | |
| CpcU-II subfamily | Syncc9902_1509 | YP_377511.1 | 154 | 11-04-2011 |
Model strains, Marine strains
Last update: 19 Jan 2018 15:12:20
