M0880 strain
[fasta] [gff] [only sure] [only unsure]
Lineage
- Eukaryota
- Rhizaria
- Cercozoa
- Paulinella
- chromatophora
Strain information
Phycobiliprotein types: PC
Pigment type: 1
Habitat: endosymbiont of amoeba
Remark: Photosynthetic endosymbiont (chromatophore) of a freshwater filose amoeba. It is genetically closest from Synechococcus sp. WH5701. Massive gene reduction (1 Mbp)
Genome sequence
Refseq record: NC_011087
Genome status: complete
Sequencing center: Leibniz Institute for Age Research
References
- Nowack et al., 2008. Chromatophore genome sequence of Paulinella sheds light on acquisition of photosynthesis by eukaryotes Curr Biol, 18, 410-418.
| Gene | Locus tag | Genbank | Remark | Length | Last change |
|---|---|---|---|---|---|
| CpcS-II subfamily | PCC_0659 | YP_002049288.1 | Protoscan score is not very high, but it matches CpcS-II best | 198 | 08-30-2012 |
| CpcU-II subfamily | PCC_0138 | YP_002048800.1 | 157 | 09-16-2012 | |
| CpcT family | PCC_0629 | YP_002049265.1 | 201 | 09-19-2012 | |
| CpcF-I subfamily | PCC_0624 | YP_002049260.1 | 224 | 12-05-2011 | |
| CpcE-I subfamily | PCC_0625 | YP_002049261.1 | 286 | 12-05-2011 | |
| IaiH family | PCC_0182 | YP_002048842.1 | 267 | 11-02-2011 |
Model strains, Marine strains
Last update: 24 Aug 2012 16:44:10
