CyanoLyase

CB0205 strain

[fasta] [gff] [only sure] [only unsure]

Lineage

Prokarya

Cyanobacteria

Chroococcales

Synechococcus

sp.

Strain information

Subcluster: 5.2

Clade/Ecotype: CB5

Phycobiliprotein types: PC+PEI

Pigment type: 2

Habitat: marine

Genome sequence

Refseq record: NZ_ADXM00000000

Genome status: contigs

Sequencing center: JCVI

References

Chen et al., 2006. Diverse and unique picocyanobacteria in Chesapeake Bay, revealed by 16S-23S rRNA internal transcribed spacer sequences Appl Environ Microbiol, 72, 2239-2243.

Gene	Locus tag	Genbank	Remark	Length	Last change
CpcS-II subfamily	SCB02_010100000529	ZP_07969387.1		201	11-04-2011
CpcT family	CB0205_0884		Gene was not modelled. Sequence not in refseq.	196	09-19-2012
CpeT family	SCB02_010100004288	ZP_07970127.1		203	11-04-2011
CpeS-II subfamily	SCB02_010100004283	ZP_07970126.1		177	11-04-2011
CpeU-II subfamily	SCB02_010100004388	ZP_07970147.1	MIVEASFVVPMS not present in refseq	206	11-25-2011
CpeY family	SCB02_010100004298	ZP_07970129.1		427	11-04-2011
CpeZ family	SCB02_010100004363	ZP_07970142.1		204	11-04-2011
CpeF family	SCB02_010100004358	ZP_07970141.1	MLFPLLV not present in genbank	305	11-04-2011
IaiH family	SCB02_010100005388	ZP_07970337.1	MAASPYESPKGSSDLDFDSEL not present in refseq	266	11-04-2011
CotB homologs 1 family	SCB02_010100002826	ZP_07969839.1		193	05-24-2012
CpcE-II subfamily	SCB02_010100004415	ZP_07970152.1		275	12-06-2011
CpcF-II subfamily	SCB02_010100004420	ZP_07970153.1	N-term possibly 5aa too long	228	12-06-2011
CpcU-II subfamily	SCB02_010100006257	ZP_07970508.1		154	12-02-2011

Model strains, Marine strains

Last update: 28 Aug 2012 14:19:58

Station biologique de Roscoff

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