WH8501 strain
[fasta] [gff] [only sure] [only unsure]
Lineage
- Prokarya
- Cyanobacteria
- Chroococcales
- Crocosphaera
- watsonii
Strain information
Phycobiliprotein types: PC+PEI
Habitat: marine
Genome sequence
References
- Bench et al., 2011. Two strains of Crocosphaera watsonii with highly conserved genomes are distinguished by strain-specific features Front Microbiol, 2, 261.
- Ong et al., 1991. Phycoerythrins of marine unicellular cyanobacteria. I. Bilin types and locations and energy transfer pathways in Synechococcus spp. phycoerythrins J Biol Chem, 266, 9515-9527.
- Swanson et al., 1991. Phycoerythrins of marine unicellular cyanobacteria. II. Characterization of phycobiliproteins with unusually high phycourobilin J Biol Chem, 266, 9528-9534.
| Gene | Locus tag | Genbank | Remark | Length | Last change |
|---|---|---|---|---|---|
| CpcS-I subfamily | CwatDRAFT_6342 | ZP_00514111.1 | 197 | 09-26-2011 | |
| CpcT family | CwatDRAFT_4238 | ZP_00515713.1 | 196 | 09-26-2011 | |
| CpcU-I subfamily | CwatDRAFT_4215 | ZP_00515818.1 | 175 | 09-26-2011 | |
| CpeT family | CwatDRAFT_0664 | ZP_00518424.1 | Several possible starts. This second (complete) cpeT copy is only distantly related to the other (partial) cpeT copy. | 215 | 09-25-2012 |
| CpeS-I subfamily | CwatDRAFT_5719 | ZP_00514726.1 | 179 | 09-26-2011 | |
| CpeY family | CwatDRAFT_0665 | ZP_00518425.1 | There is another partial CpeY sequence in this genome almost 100% identical to this one (possibly an assembly error). | 419 | 08-27-2012 |
| CpeZ family | CwatDRAFT_5981 | ZP_00514214.1 | 204 | 09-26-2011 | |
| CpeF family | CwatDRAFT_0409 | ZP_00518851.1 | 288 | 10-25-2011 | |
| RpcG family | CwatDRAFT_0661 | ZP_00518422.1 | Although this genome also contains rpcE/F genes, WH8501 has been shown that alpha-PC attaches a PUB (Swanson et al. 1991). So the role of rpcE/F genes is unclear. | 473 | 08-30-2012 |
| IaiH family | CwatDRAFT_4428 | ZP_00515633.1 | 250 | 10-26-2011 | |
| CotB family | CwatDRAFT_1185 | ZP_00517831.1 | 218 | 09-26-2011 | |
| CpcE-I subfamily | CwatDRAFT_3431 | ZP_00516610.1 | Not clustered with cpcF-I. This strain also possesses an RpcG-like sequence which should act on the same alpha-PC binding site as CpcE/F. | 284 | 10-30-2012 |
| CpcF-I subfamily | CwatDRAFT_6054 | ZP_00513615.1 | Not clustered with cpcE-I. This strain also possesses an RpcG-like sequence which should act on the same alpha-PC binding site as CpcE/F. | 194 | 10-30-2012 |
| CpeY family | CwatDRAFT_5980 | ZP_00514215.1 | Sequence incomplete. N-term extended (35 aa added) but still incomplete. | 282 | 08-27-2012 |
| NblB family | CwatDRAFT_3505 | ZP_00516591.1 | Blastp | 219 | 09-26-2011 |
| CotB homologs 2 family | CwatDRAFT_4214 | ZP_00515817.1 | 223 | 11-24-2011 | |
| CpeZ family | CwatDRAFT_0406 | ZP_00518848.1 | Low score, similar to Tery_0980 (IMS101) | 219 | 12-02-2011 |
| CpeT family | CwatDRAFT_5720 | ZP_00514725.1 | Similar to CpeT, but with a 51 aa deletion in the middle. N- and C-term closely related to WH0003 cpeT sequence. | 149 | 09-26-2012 |
| L8106_16949 homologs family | CwatDRAFT_4661 | ZP_00515205.1 | 377 | 12-05-2011 | |
| L8106_22089 homologs family | CwatDRAFT_0171 | ZP_00519405.1 | split between 3 different contigs: ZP_00517336.1 (CwatDRAFT_2581), ZP_00513741.1 (CwatDRAFT_6637) and ZP_00519405.1 (CwatDRAFT_0171) | 107 | 08-29-2012 |
Model strains, Marine strains
Last update: 30 Aug 2012 15:10:09
