PCC7002 strain
[fasta] [gff] [only sure] [only unsure]
Lineage
- Prokarya
- Cyanobacteria
- Chroococcales
- Synechococcus
- sp.
Strain information
Subcluster: 3
Phycobiliprotein types: PC
Pigment type: 1
Habitat: marine halotolerant
Remark: Strain in which CpcE/F (Zhou et al,1992; Fairchild et al., 1992; Fairchild & Glazer 1994), CpcT (Shen et al, 2006), CpcS-I and CpcU (Saunée et al, 2008, Shen et al, 2008) have been characterized.
Genome sequence
References
- Fairchild et al., 1994. Oligomeric structure, enzyme kinetics, and substrate specificity of the phycocyanin alpha subunit phycocyanobilin lyase J Biol Chem, 269, 8686-8694.
- Fairchild et al., 1992. Phycocyanin alpha-subunit phycocyanobilin lyase Proc Natl Acad Sci USA, 89, 7017-7021.
- Ludwig et al., 2011. Transcription Profiling of the Model Cyanobacterium Synechococcus sp. Strain PCC 7002 by Next-Gen (SOLiD™) Sequencing of cDNA Front Microbiol, 2, 41.
- Saunée et al., 2008. Biogenesis of phycobiliproteins: II. CpcS-I and CpcU comprise the heterodimeric bilin lyase that attaches phycocyanobilin to Cys-82 of beta-phycocyanin and Cys-81 of allophycocyanin subunits in Synechococcus sp. PCC 7002 J Biol Chem, 283, 7513-7522.
- Shen et al., 2006. Identification and characterization of a new class of bilin lyase: the cpcT gene encodes a bilin lyase responsible for attachment of phycocyanobilin to Cys-153 on the beta subunit of phycocyanin in Synechococcus sp. PCC 7002 J Biol Chem, 281, 17768-17778.
- Shen et al., 2008. Biogenesis of phycobiliproteins: I. cpcS-I and cpcU mutants of the cyanobacterium Synechococcus sp. PCC 7002 define a heterodimeric phycocyanobilin lyase specific for beta-phycocyanin and allophycocyanin subunits J Biol Chem, 283, 7503-7512.
- Zhou et al., 1992. The cpcE and cpcF genes of Synechococcus sp. PCC 7002. Construction and phenotypic characterization of interposon mutants J Biol Chem, 267, 16138-16145.
| Gene | Locus tag | Genbank | Remark | Length | Last change |
|---|---|---|---|---|---|
| CpcS-I subfamily | SYNPCC7002_A1822 | YP_001735066.1 | 198 | 09-26-2011 | |
| CpcT family | SYNPCC7002_A2095 | YP_001735334.1 | 199 | 09-26-2011 | |
| CpcU-I subfamily | SYNPCC7002_A2053 | YP_001735295.1 | 183 | 09-26-2011 | |
| CpcV family | SYNPCC7002_A2772 | YP_001736001.1 | Possible alternative start which would make sequence 28 aa shorter (MPCPGLQENVTIYKLSIDICRSSRSSSP) | 202 | 09-26-2011 |
| IaiH family | SYNPCC7002_A1412 | YP_001734659.1 | 246 | 10-26-2011 | |
| CotB homologs 2 family | SYNPCC7002_A1440 | YP_001734687.1 | 222 | 09-26-2011 | |
| CpcE-I subfamily | SYNPCC7002_A2213 | YP_001735449.1 | 268 | 09-26-2011 | |
| CpcF-I subfamily | SYNPCC7002_A2214 | YP_001735450.1 | 213 | 09-26-2011 | |
| NblB family | SYNPCC7002_A0348 | YP_001733614.1 | Blastp | 218 | 09-26-2011 |
| L8106_16949 homologs family | SYNPCC7002_A1619 | YP_001734865.1 | 393 | 12-05-2011 |
Model strains, Marine strains
Last update: 30 Aug 2012 7:57:43
