WH8016 strain
[fasta] [gff] [only sure] [only unsure]
Lineage
- Prokarya
- Cyanobacteria
- Chroococcales
- Synechococcus
- sp.
Strain information
Subcluster: 5.1
Clade/Ecotype: I
Subclade: Ib
Phycobiliprotein types: PC+PEI+PEII
Pigment type: 3aA
Habitat: marine
Genome sequence
References
- Humily et al., 2013. A gene island with two possible configurations is involved in chromatic acclimation in marine Synechococcus PLoS One, 8, e84459.
- Mazard et al., 2012. Multi-locus sequence analysis, taxonomic resolution and biogeography of marine Synechococcus Environmental Microbiology, 14, 372–386.
| Gene | Locus tag | Genbank | Remark | Length | Last change |
|---|---|---|---|---|---|
| CpcS-II subfamily | Syn8016DRAFT_2357 | ZP_08957012.1 | 203 | 11-04-2011 | |
| CpeT family | Syn8016DRAFT_2760 | ZP_08957413.1 | 201 | 11-04-2011 | |
| CpeS-II subfamily | Syn8016DRAFT_2761 | ZP_08957414.1 | 179 | 11-04-2011 | |
| CpeU-II subfamily | Syn8016DRAFT_2746 | ZP_08957399.1 | N-term shortened by 22aa (METVPTFQSNGPMTVSDSSLEV) | 204 | 11-25-2011 |
| CpeY family | Syn8016DRAFT_2753 | ZP_08957406.1 | 438 | 11-04-2011 | |
| CpeZ family | Syn8016DRAFT_2750 | ZP_08957403.1 | 204 | 11-04-2011 | |
| CpeF family | Syn8016DRAFT_2751 | ZP_08957404.1 | 308 | 11-04-2011 | |
| MpeY family | Syn8016DRAFT_2756 | ZP_08957409.1 | 402 | 11-04-2011 | |
| RpcT family | Syn8016DRAFT_2741 | ZP_08957394.1 | 196 | 11-04-2011 | |
| IaiH family | Syn8016DRAFT_2224 | ZP_08956879.1 | 269 | 11-04-2011 | |
| CotB homologs 1 family | Syn8016DRAFT_1730 | ZP_08956385.1 | 208 | 11-04-2011 | |
| RpcE subfamily | Syn8016DRAFT_2740 | ZP_08957393.1 | 269 | 11-04-2011 | |
| RpcF subfamily | Syn8016DRAFT_2739 | ZP_08957392.1 | 211 | 11-04-2011 | |
| CpcU-II subfamily | Syn8016DRAFT_2448 | ZP_08957102.1 | 158 | 12-02-2011 |
Model strains, Marine strains
Last update: 19 Jan 2018 15:17:19
