PCC7110 strain
[fasta] [gff] [only sure] [only unsure]
Lineage
- Prokarya
- Cyanobacteria
- Nostocales
- Scytonema
- hofmanni
Strain information
Phycobiliprotein types: PC+PEC
Habitat: limestone
Remark: refseq not yet available
Bioproject: PRJNA157363
protein datafile available at http://www.molevol.de/resources/012cyano/PCC7110_cds_aa.fas
Genome sequence
Genome status: contigs
Sequencing center: Heinrich-Heine-University Duesseldorf
References
- Dagan et al., 2013. Genomes of Stigonematalean cyanobacteria (subsection V) and the evolution of oxygenic photosynthesis from prokaryotes to plastids Genome Biol Evol, 5, 31-44.
| Gene | Locus tag | Genbank | Remark | Length | Last change |
|---|---|---|---|---|---|
| CpcS-III subfamily | Scytonema_PCC7110_joined_11887 | 189 | 06-12-2013 | ||
| CpcV family | Scytonema_PCC7110_joined_9349 | 190 | 06-12-2013 | ||
| CpcT family | Scytonema_PCC7110_joined_8455 | 196 | 06-12-2013 | ||
| CpcE-I subfamily | Scytonema_PCC7110_joined_1634 | 276 | 06-12-2013 | ||
| CpcF-I subfamily | Scytonema_PCC7110_joined_1635 | 206 | 06-12-2013 | ||
| PecE family | Scytonema_PCC7110_joined_1626 | 258 | 06-12-2013 | ||
| PecF family | Scytonema_PCC7110_joined_1627 | 170 | 06-12-2013 | ||
| IaiH family | Scytonema_PCC7110_joined_9529 | 253 | 06-12-2013 | ||
| NblB family | Scytonema_PCC7110_joined_5306 | 226 | 06-12-2013 | ||
| T homologs family | Scytonema_PCC7110_joined_9421 | 198 | 06-12-2013 | ||
| L8106_16949 homologs family | Scytonema_PCC7110_joined_8104 | 429 | 06-12-2013 | ||
| L8106_22089 homologs family | Scytonema_PCC7110_joined_4761 | 389 | 06-12-2013 | ||
| CotB homologs 2 family | Scytonema_PCC7110_joined_11888 | 226 | 06-12-2013 |
Model strains, Marine strains
Last update: 13 Jun 2013 9:28:59
