3L strain

[fasta] [gff] [only sure] [only unsure]

Lineage

Prokarya

Cyanobacteria

Oscillatoriales

Lyngbya

majuscula

Strain information

Phycobiliprotein types: PC+PEI

Pigment type: 2

Habitat: marine

Genome sequence

Refseq record: NZ_AEPQ00000000

Genome status: draft

Sequencing center: Scripps Institution of Oceanography

Gene	Locus tag	Genbank	Remark	Length	Last change
CpcS-I subfamily	LYNGBM3L_55940	ZP_08427741.1		216	10-19-2011
CpeS-I subfamily	LYNGBM3L_16710	ZP_08428242.1		178	10-19-2011
CpeU-I subfamily	LYNGBM3L_55920	ZP_08427738.1		197	11-25-2011
CpcU-I subfamily	LYNGBM3L_17960	ZP_08426426.1	Protomata tells it is CpcU. Blast tells it is CpcSIII (but with a 17aa gap)	190	10-19-2011
CpcT family	LYNGBM3L_15770	ZP_08426266.1		204	10-19-2011
CpeT family	LYNGBM3L_16720	ZP_08428243.1		203	10-19-2011
CpcE-I subfamily	LYNGBM3L_16670	ZP_08428232.1		278	10-19-2011
CpcF-I subfamily	LYNGBM3L_16650	ZP_08428231.1		212	10-19-2011
CpeY family	LYNGBM3L_56120	ZP_08427724.1		427	10-19-2011
CpeZ family	LYNGBM3L_56070	ZP_08427728.1		220	10-19-2011
CpeF family	LYNGBM3L_55090	ZP_08427735.1		289	10-28-2011
NblB family	LYNGBM3L_66920	ZP_08431562.1		220	10-28-2011
CotB family	LYNGBM3L_16600	ZP_08428239.1		218	10-28-2011
CotB homologs 2 family	LYNGBM3L_17970	ZP_08426427.1		223	10-28-2011
IaiH family	LYNGBM3L_64630	ZP_08431563.1		252	11-02-2011
CpcS homologs family	LYNGBM3L_16700	ZP_08428241.1		183	11-16-2011
L8106_16949 homologs family	LYNGBM3L_62310	ZP_08431195.1		397	12-05-2011
MC7420_3535 homologs family	LYNGBM3L_29440	ZP_08428664.1		1405	12-05-2011
MC7420_3535 homologs family	LYNGBM3L_30460	ZP_08428879.1		1365	12-06-2011
L8106_22089 homologs family	LYNGBM3L_34780	ZP_08427350.1		422	12-06-2011
MC7420_3535 homologs family	LYNGBM3L_55810	ZP_08427827.1		1106	12-06-2011
MC7420_3535 homologs family	LYNGBM3L_00970	ZP_08427981.1		1139	12-06-2011
MC7420_3535 homologs family	LYNGBM3L_75690	ZP_08427936.1		1108	12-06-2011
MC7420_3535 homologs family	LYNGBM3L_40770	ZP_08429450.1		1273	12-07-2011

Model strains, Marine strains

Last update: 24 Aug 2012 17:00:23