CyanoLyase

NblB family

Description

NblB has a role in PBS degradation (together with NblA and NblC). A Synechococcus sp. PCC7942 nblB-less mutant was shown to lack the ability to degrade its phycobilisomes during either sulfur or nitrogen limitation and exhibited an increased ratio of phycocyanin to chlorophyll during nutrient-replete growth (Dolganov and Grossman, 1999). NblB is absent from marine picocyanobacteria. Recently Hu et al. (2019) showed that together with NblA, NblB can 1) interfere with chromophorylation as well as chromophore-detachment of phycobiliprotein; 2) promote dissociation of whole phycobilisomes, cores and, in particular, allophycocyanin trimers. 3) While NblA and NblB do not interact with each other, both interact with lyases, apo- and holo-biliproteins; 4) They promote synergistically the lyase-catalyzed chromophorylation of the β-subunit of the major rod component, C-phycocyanin. 5) They modulate lyase-catalyzed and lyase-independent chromophore transfers among biliproteins, with the core protein, ApcF, the rod protein, CpcA, and sensory biliproteins (phytochromes, cyanobacteriochromes) acting as potential traps. Altogether NblA/B can cooperate with the lyases in remodeling the phycobilisomes.

References

  • Dolganov et al., 1999. A polypeptide with similarity to phycocyanin alpha-subunit phycocyanobilin lyase involved in degradation of phycobilisomes J Bacteriol, 181, 610-617.
  • Hu et al., 2019. The role of lyases, NblA and NblB proteins and bilin chromophore transfer in restructuring the cyanobacterial light harvesting complex Plant J.
  • Li et al., 2002. Characterization of Synechocystis sp. strain PCC 6803 and Delta nbl mutants under nitrogen-deficient conditions Archiv Microbiol, 178, 256-266.

Gene Locus tag Genbank Species Strain PBP in rods Pigment type Remark Length Last change
NblB family L8106_00260 ZP_01624763.1 Lyngbya aestuarii CCY9616 (PCC8106/CCY8106) PC 1 223 09-26-2011
NblB family S7335_5595 ZP_05039147.1 Synechococcus sp. PCC7335 PC+PEI CA3 Blastp 223 09-26-2011
NblB family SYNPCC7002_A0348 YP_001733614.1 Synechococcus sp. PCC7002 PC 1 Blastp 218 09-26-2011
NblB family sll1663 NP_440142.1 Synechocystis sp. PCC6803 (ATCC27184) PC 1 Blastp 220 09-26-2011
NblB family alr3814 NP_487854.1 Anabaena (Nostoc) sp. PCC7120 PC+PEC Blastp 220 09-26-2011
NblB family Ava_1888 YP_322405.1 Anabaena variabilis ATCC29413 (PCC7937) PC+PEC Blastp 220 09-27-2011
NblB family Aazo_0577 YP_003720196.1 Anabaena (Nostoc) azollae 0708 PC+PEC Blastp 218 09-26-2011
NblB family AmaxDRAFT_4484 ZP_03275659.1 Arthrospira (Spirulina) maxima CS-328 PC 1 Blastp 220 09-26-2011
NblB family CwatDRAFT_3505 ZP_00516591.1 Crocosphaera watsonii WH8501 PC+PEI Blastp 219 09-26-2011
NblB family cce_3386 YP_001804800.1 Cyanothece sp. ATCC51142 PC 1 N-term shortened (15 aa removed: MRWFLVNILIYPFII) 219 09-13-2012
NblB family PCC7424_2563 YP_002377847.1 Cyanothece sp. PCC7424 PC+PEI 2 Blastp 220 09-26-2011
NblB family Cyan7425_1432 YP_002482166.1 Cyanothece sp. PCC7425 PC 1 Blastp 220 09-26-2011
NblB family PCC8801_0932 YP_002371165.1 Cyanothece sp. PCC8801 PC+PEI 2 Blastp 220 09-26-2011
NblB family Cyan8802_0959 YP_003136728.1 Cyanothece sp. PCC8802 PC 1 Blastp 220 09-26-2011
NblB family CY0110_12007 ZP_01731445.1 Cyanothece sp. CCY0110 PC 1 Blastp 219 09-26-2011
NblB family Cyan7822_3518 YP_003888735.1 Cyanothece sp. PCC7822 PC+PEI 2 Blastp 220 09-26-2011
NblB family gvip306 NP_925180.1 Gloeobacter violaceus PCC7421 PC+PEI 2 Blastp 215 11-24-2011
NblB family MC7420_7663 ZP_05023685.1 Microcoleus chthonoplastes PCC7420 PC+PEC N-term shortened (11 aa removed: MSDYLLLNTLQ) 218 09-13-2012
NblB family MAE_14280 YP_001656442.1 Microcystis aeruginosa NIES-843 PC 1 Blastp 221 09-26-2011
NblB family N9414_09806 ZP_01630150.1 Nodularia spumigena CCY9414 PC 1 Blastp 220 09-26-2011
NblB family Npun_R5793 YP_001869034.1 Nostoc punctiforme ATCC29133 (PCC73102) PC+PEI 2 Blastp 221 09-26-2011
NblB family Synpcc7942_1823 YP_400840.1 Synechococcus elongatus PCC7942 PC 1 219 08-28-2012
NblB family syc2271_d YP_172981.1 Synechococcus elongatus PCC6301 (ATCC 27144) PC 1 Blastp 221 09-26-2011
NblB family CYB_0185 YP_476448.1 Synechococcus sp. JA-2-3B'a(2-13) PC 1 Blastp 227 09-26-2011
NblB family CYA_2789 YP_476154.1 Synechococcus sp. JA-3-3Ab PC 1 Blastp 226 09-26-2011
NblB family tlr0766 NP_681555.1 Thermosynechococcus elongatus BP-1 PC 1 Blastp 226 09-26-2011
NblB family Tery_2239 YP_721941.1 Trichodesmium erythraeum IMS101 PC+PEI Blastp 220 09-26-2011
NblB family CRD_02854 ZP_06306309.1 Raphidiopsis brookii D9 PC 1 226 10-28-2011
NblB family CRC_01060 ZP_06307576.1 Cylindrospermopsis raciborskii CS-505 PC 1 226 10-28-2011
NblB family OSCI_3860033 ZP_07113489.1 Oscillatoria sp. PCC6506 (PCC9029/ATCC29081 /UTEX 1547) PC 1 220 10-28-2011
NblB family LYNGBM3L_66920 ZP_08431562.1 Lyngbya majuscula 3L PC+PEI 2 220 10-28-2011
NblB family MicvaDRAFT_5366 ZP_08492865.1 Microcoleus vaginatus FGP-2 PC 1 224 10-28-2011
NblB family NIES39_D03910 BAI89809.1 Arthrospira (Spirulina) platensis NIES-39 PC 1 220 10-28-2011
NblB family IPF_2775 CAO89282.1 Microcystis aeruginosa PCC7806 PC 1 221 10-28-2011
NblB family FJSC11DRAFT_0382 ZP_08984176.1 Fischerella sp. (Mastigocladus laminosus) JSC-11 PC+PEC 221 11-24-2011
NblB family GL6909_3251 Gloeothece sp. PCC6909/1 PC+PEI 2 Truncated because the original orf was fused with another 220 11-30-2011
NblB family Cy51472DRAFT_2453 ZP_08973657.1 Cyanothece sp. ATCC51472 PC 1 219 01-10-2012
NblB family AplaP_010100017289 ZP_06383430.1 Arthrospira (Spirulina) platensis Paraca PC 1 N-term shortened (18 aa removed: MRVAPDLNRQQLLNCLTK) 220 09-13-2012
NblB family CWATWH0003_3083 EHJ12197.1 Crocosphaera watsonii WH0003 PC+PEI 219 02-22-2012
NblB family MICAI_3110003 ZP_10229074.1 Microcystis sp. T1-4 PC+PEI 2 221 08-22-2012
NblB family MICAG_200023 CCI23270.1 Microcystis aeruginosa PCC9808 PC 1 221 08-22-2012
NblB family MICAB_4960020 CCH98552.1 Microcystis aeruginosa PCC9717 PC 1 221 08-23-2012
NblB family MICAK_580022 CCI38703.1 Microcystis aeruginosa PCC9701 PC 1 221 08-23-2012
NblB family MICAC_3690016 CCI02719.1 Microcystis aeruginosa PCC9443 PC 1 221 08-23-2012
NblB family MICAD_2940015 CCI08016.1 Microcystis aeruginosa PCC7941 PC 1 221 08-23-2012
NblB family Cylst_5091 YP_007149816.1 Cylindrospermum stagnale PCC7417 PC+PEC 220 04-24-2013
NblB family Anacy_2696 YP_007157043.1 Anabaena cylindrica PCC7122 PC+PEC 220 04-24-2013
NblB family Nos7524_4874 YP_007078199.1 Nostoc sp. PCC7524 PC+PEC 220 04-24-2013
NblB family Mic7113_4080 YP_007123190.1 Microcoleus sp. PCC7113 PC+PEI 2 218 04-24-2013
NblB family Osc7112_0710 YP_007113716.1 Oscillatoria nigro-viridis PCC7112 PC+PEI 2 224 04-24-2013
NblB family ZP_20934124 ZP_20934124.1 Microcystis aeruginosa TAIHU98 PC 1 221 04-24-2013
NblB family Syn7509DRAFT_00041170 ZP_21039471.1 Synechocystis sp. PCC7509 PC 220 04-24-2013
NblB family Ple7327_1847 YP_007080751.1 Pleurocapsa sp. PCC7327 PC+PEI 219 04-24-2013
NblB family Lepto7376_0558 YP_007069818.1 Leptolyngbya sp. PCC7376 PC+PEI 218 04-24-2013
NblB family Xen7305DRAFT_00012810 ZP_21056844.1 Xenococcus sp. PCC7305 PC+PEI 219 04-24-2013
NblB family Glo7428_4688 YP_007130281.1 Gloeocapsa sp. PCC7428 PC 223 04-24-2013
NblB family Chro_0989 YP_007090391.1 Chroococcidiopsis thermalis PCC7203 PC+PEC 219 04-24-2013
NblB family Riv7116_0216 YP_007053370.1 Rivularia sp. PCC7116 PC+PEC 218 04-24-2013
NblB family GLO73106DRAFT_00006030 ZP_21052179.1 Gloeocapsa sp. PCC73106 PC+PEI 218 04-24-2013
NblB family PCC7418_1214 YP_007167630.1 Halothece sp. PCC7418 PC 224 04-24-2013
NblB family ZP_18908692 ZP_18908692.1 Leptolyngbya sp. PCC7375 PC+PEI 2 223 04-24-2013
NblB family Cyast_1913 YP_007165517.1 Cyanobacterium stanieri PCC7202 PC 221 04-24-2013
NblB family Dacsa_1202 YP_007171258.1 Dactylococcopsis salina PCC8305 224 04-24-2013
NblB family Cal7507_1540 YP_007064834.1 Calothrix sp. PCC7507 PC+PEC 220 04-29-2013
NblB family Sta7437_3389 YP_007133861.1 Stanieria cyanosphaera PCC7437 PC+PEI 220 04-29-2013
NblB family MICCA_930006 ZP_18815469.1 Microcystis aeruginosa PCC9432 PC 1 221 04-29-2013
NblB family Nos7107_4026 YP_007051729.1 Nostoc sp. PCC7107 PC+PEC 221 04-29-2013
NblB family Cri9333_0875 YP_007141302.1 Crinalium epipsammum PCC9333 PC 221 04-29-2013
NblB family Cal6303_0988 YP_007136025.1 Calothrix sp. PCC6303 PC+PEI 2 218 04-29-2013
NblB family Cyan10605_2137 YP_007162269.1 Cyanobacterium aponimum PCC10605 219 04-29-2013
NblB family Oscil6304_1780 YP_007085378.1 Oscillatoria acuminata PCC6304 (SAG 1449-3) PC 222 04-29-2013
NblB family GEI7407_0128 YP_007107685.1 Geitlerinema sp. PCC7407 PC 220 04-29-2013
NblB family Lep6406DRAFT_00023300 ZP_21046418.1 Leptolyngbya sp. PCC6406 PC+PEC 220 04-29-2013
NblB family Syn6312_0129 YP_007059926.1 Synechococcus sp. PCC6312 PC 222 04-29-2013
NblB family Cha6605_0245 YP_007095074.1 Chamaesiphon minutus PCC6605 PC+PEI 213 04-29-2013
NblB family LepboDRAFT_1028 Leptolyngbya boryana PCC6306 PC 219 06-11-2013
NblB family Fis9431DRAFT_1583 Fischerella sp. PCC9431 PC+PEC 221 06-12-2013
NblB family FIS9605DRAFT_03310 Fischerella sp. PCC9605 PC+PEC 220 06-12-2013
NblB family FisPCC73103_7578 Fischerella muscicola PCC73103 (SAG 1427-1) PC+PEC 221 06-12-2013
NblB family Scytonema_PCC7110_joined_5306 Scytonema hofmanni PCC7110 PC+PEC 226 06-12-2013
NblB family Osc10802DRAFT_5396 Oscillatoria sp. PCC10802 PC+PEI 336 06-12-2013
NblB family PCC9339DRAFT_01092 Fischerella sp. PCC9339 PC+PEC 221 06-12-2013
NblB family Ana7108_1853 Anabaena sp. PCC7108 PC+PEC 218 06-12-2013
NblB family Chloroglopsis_PCC9212_joined_453 Chlorogloeopsis sp. PCC9212 PC+PEC 221 06-12-2013
NblB family UYC_04806 Chlorogloeopsis fritschii PCC6912 PC+PEC 221 06-12-2013
NblB family FisPCC7414_2854 Fischerella muscicola PCC7414 PC+PEC 221 06-12-2013
NblB family Fischerella_sp._PCC7521_5286 Fischerella thermalis PCC7521 PC+PEC 221 06-12-2013
NblB family Syn7502_00033 YP_007104343.1 Synechococcus sp. PCC7502 PC 219 06-20-2013
NblB family Pse7367_2182 YP_007102874.1 Pseudanabaena sp. PCC7367 PC+PEI 241 06-20-2013
NblB family Pse7429DRAFT_0756 ZP_21065042.1 Pseudanabaena sp. (biceps) PCC7429 PC 225 06-20-2013

Model strain Model strains, Marine strains

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