NblB family
[fasta] [only sure] [only unsure]
Description
NblB has a role in PBS degradation (together with NblA and NblC). A Synechococcus sp. PCC7942 nblB-less mutant was shown to lack the ability to degrade its phycobilisomes during either sulfur or nitrogen limitation and exhibited an increased ratio of phycocyanin to chlorophyll during nutrient-replete growth (Dolganov and Grossman, 1999). NblB is absent from marine picocyanobacteria. Recently Hu et al. (2019) showed that together with NblA, NblB can 1) interfere with chromophorylation as well as chromophore-detachment of phycobiliprotein; 2) promote dissociation of whole phycobilisomes, cores and, in particular, allophycocyanin trimers. 3) While NblA and NblB do not interact with each other, both interact with lyases, apo- and holo-biliproteins; 4) They promote synergistically the lyase-catalyzed chromophorylation of the β-subunit of the major rod component, C-phycocyanin. 5) They modulate lyase-catalyzed and lyase-independent chromophore transfers among biliproteins, with the core protein, ApcF, the rod protein, CpcA, and sensory biliproteins (phytochromes, cyanobacteriochromes) acting as potential traps. Altogether NblA/B can cooperate with the lyases in remodeling the phycobilisomes.
Motif
A motif characterising this family is available.
References
- Dolganov et al., 1999. A polypeptide with similarity to phycocyanin alpha-subunit phycocyanobilin lyase involved in degradation of phycobilisomes J Bacteriol, 181, 610-617.
- Hu et al., 2019. The role of lyases, NblA and NblB proteins and bilin chromophore transfer in restructuring the cyanobacterial light harvesting complex Plant J.
- Li et al., 2002. Characterization of Synechocystis sp. strain PCC 6803 and Delta nbl mutants under nitrogen-deficient conditions Archiv Microbiol, 178, 256-266.
Gene | Locus tag | Genbank | Species | Strain | PBP in rods | Pigment type | Remark | Length | Last change |
---|---|---|---|---|---|---|---|---|---|
NblB family | L8106_00260 | ZP_01624763.1 | Lyngbya aestuarii | CCY9616 (PCC8106/CCY8106) | PC | 1 | 223 | 09-26-2011 | |
NblB family | S7335_5595 | ZP_05039147.1 | Synechococcus sp. | PCC7335 | PC+PEI | CA3 | Blastp | 223 | 09-26-2011 |
NblB family | SYNPCC7002_A0348 | YP_001733614.1 | Synechococcus sp. | PCC7002 | PC | 1 | Blastp | 218 | 09-26-2011 |
NblB family | sll1663 | NP_440142.1 | Synechocystis sp. | PCC6803 (ATCC27184) | PC | 1 | Blastp | 220 | 09-26-2011 |
NblB family | alr3814 | NP_487854.1 | Anabaena (Nostoc) sp. | PCC7120 | PC+PEC | Blastp | 220 | 09-26-2011 | |
NblB family | Ava_1888 | YP_322405.1 | Anabaena variabilis | ATCC29413 (PCC7937) | PC+PEC | Blastp | 220 | 09-27-2011 | |
NblB family | Aazo_0577 | YP_003720196.1 | Anabaena (Nostoc) azollae | 0708 | PC+PEC | Blastp | 218 | 09-26-2011 | |
NblB family | AmaxDRAFT_4484 | ZP_03275659.1 | Arthrospira (Spirulina) maxima | CS-328 | PC | 1 | Blastp | 220 | 09-26-2011 |
NblB family | CwatDRAFT_3505 | ZP_00516591.1 | Crocosphaera watsonii | WH8501 | PC+PEI | Blastp | 219 | 09-26-2011 | |
NblB family | cce_3386 | YP_001804800.1 | Cyanothece sp. | ATCC51142 | PC | 1 | N-term shortened (15 aa removed: MRWFLVNILIYPFII) | 219 | 09-13-2012 |
NblB family | PCC7424_2563 | YP_002377847.1 | Cyanothece sp. | PCC7424 | PC+PEI | 2 | Blastp | 220 | 09-26-2011 |
NblB family | Cyan7425_1432 | YP_002482166.1 | Cyanothece sp. | PCC7425 | PC | 1 | Blastp | 220 | 09-26-2011 |
NblB family | PCC8801_0932 | YP_002371165.1 | Cyanothece sp. | PCC8801 | PC+PEI | 2 | Blastp | 220 | 09-26-2011 |
NblB family | Cyan8802_0959 | YP_003136728.1 | Cyanothece sp. | PCC8802 | PC | 1 | Blastp | 220 | 09-26-2011 |
NblB family | CY0110_12007 | ZP_01731445.1 | Cyanothece sp. | CCY0110 | PC | 1 | Blastp | 219 | 09-26-2011 |
NblB family | Cyan7822_3518 | YP_003888735.1 | Cyanothece sp. | PCC7822 | PC+PEI | 2 | Blastp | 220 | 09-26-2011 |
NblB family | gvip306 | NP_925180.1 | Gloeobacter violaceus | PCC7421 | PC+PEI | 2 | Blastp | 215 | 11-24-2011 |
NblB family | MC7420_7663 | ZP_05023685.1 | Microcoleus chthonoplastes | PCC7420 | PC+PEC | N-term shortened (11 aa removed: MSDYLLLNTLQ) | 218 | 09-13-2012 | |
NblB family | MAE_14280 | YP_001656442.1 | Microcystis aeruginosa | NIES-843 | PC | 1 | Blastp | 221 | 09-26-2011 |
NblB family | N9414_09806 | ZP_01630150.1 | Nodularia spumigena | CCY9414 | PC | 1 | Blastp | 220 | 09-26-2011 |
NblB family | Npun_R5793 | YP_001869034.1 | Nostoc punctiforme | ATCC29133 (PCC73102) | PC+PEI | 2 | Blastp | 221 | 09-26-2011 |
NblB family | Synpcc7942_1823 | YP_400840.1 | Synechococcus elongatus | PCC7942 | PC | 1 | 219 | 08-28-2012 | |
NblB family | syc2271_d | YP_172981.1 | Synechococcus elongatus | PCC6301 (ATCC 27144) | PC | 1 | Blastp | 221 | 09-26-2011 |
NblB family | CYB_0185 | YP_476448.1 | Synechococcus sp. | JA-2-3B'a(2-13) | PC | 1 | Blastp | 227 | 09-26-2011 |
NblB family | CYA_2789 | YP_476154.1 | Synechococcus sp. | JA-3-3Ab | PC | 1 | Blastp | 226 | 09-26-2011 |
NblB family | tlr0766 | NP_681555.1 | Thermosynechococcus elongatus | BP-1 | PC | 1 | Blastp | 226 | 09-26-2011 |
NblB family | Tery_2239 | YP_721941.1 | Trichodesmium erythraeum | IMS101 | PC+PEI | Blastp | 220 | 09-26-2011 | |
NblB family | CRD_02854 | ZP_06306309.1 | Raphidiopsis brookii | D9 | PC | 1 | 226 | 10-28-2011 | |
NblB family | CRC_01060 | ZP_06307576.1 | Cylindrospermopsis raciborskii | CS-505 | PC | 1 | 226 | 10-28-2011 | |
NblB family | OSCI_3860033 | ZP_07113489.1 | Oscillatoria sp. | PCC6506 (PCC9029/ATCC29081 /UTEX 1547) | PC | 1 | 220 | 10-28-2011 | |
NblB family | LYNGBM3L_66920 | ZP_08431562.1 | Lyngbya majuscula | 3L | PC+PEI | 2 | 220 | 10-28-2011 | |
NblB family | MicvaDRAFT_5366 | ZP_08492865.1 | Microcoleus vaginatus | FGP-2 | PC | 1 | 224 | 10-28-2011 | |
NblB family | NIES39_D03910 | BAI89809.1 | Arthrospira (Spirulina) platensis | NIES-39 | PC | 1 | 220 | 10-28-2011 | |
NblB family | IPF_2775 | CAO89282.1 | Microcystis aeruginosa | PCC7806 | PC | 1 | 221 | 10-28-2011 | |
NblB family | FJSC11DRAFT_0382 | ZP_08984176.1 | Fischerella sp. (Mastigocladus laminosus) | JSC-11 | PC+PEC | 221 | 11-24-2011 | ||
NblB family | GL6909_3251 | Gloeothece sp. | PCC6909/1 | PC+PEI | 2 | Truncated because the original orf was fused with another | 220 | 11-30-2011 | |
NblB family | Cy51472DRAFT_2453 | ZP_08973657.1 | Cyanothece sp. | ATCC51472 | PC | 1 | 219 | 01-10-2012 | |
NblB family | AplaP_010100017289 | ZP_06383430.1 | Arthrospira (Spirulina) platensis | Paraca | PC | 1 | N-term shortened (18 aa removed: MRVAPDLNRQQLLNCLTK) | 220 | 09-13-2012 |
NblB family | CWATWH0003_3083 | EHJ12197.1 | Crocosphaera watsonii | WH0003 | PC+PEI | 219 | 02-22-2012 | ||
NblB family | MICAI_3110003 | ZP_10229074.1 | Microcystis sp. | T1-4 | PC+PEI | 2 | 221 | 08-22-2012 | |
NblB family | MICAG_200023 | CCI23270.1 | Microcystis aeruginosa | PCC9808 | PC | 1 | 221 | 08-22-2012 | |
NblB family | MICAB_4960020 | CCH98552.1 | Microcystis aeruginosa | PCC9717 | PC | 1 | 221 | 08-23-2012 | |
NblB family | MICAK_580022 | CCI38703.1 | Microcystis aeruginosa | PCC9701 | PC | 1 | 221 | 08-23-2012 | |
NblB family | MICAC_3690016 | CCI02719.1 | Microcystis aeruginosa | PCC9443 | PC | 1 | 221 | 08-23-2012 | |
NblB family | MICAD_2940015 | CCI08016.1 | Microcystis aeruginosa | PCC7941 | PC | 1 | 221 | 08-23-2012 | |
NblB family | Cylst_5091 | YP_007149816.1 | Cylindrospermum stagnale | PCC7417 | PC+PEC | 220 | 04-24-2013 | ||
NblB family | Anacy_2696 | YP_007157043.1 | Anabaena cylindrica | PCC7122 | PC+PEC | 220 | 04-24-2013 | ||
NblB family | Nos7524_4874 | YP_007078199.1 | Nostoc sp. | PCC7524 | PC+PEC | 220 | 04-24-2013 | ||
NblB family | Mic7113_4080 | YP_007123190.1 | Microcoleus sp. | PCC7113 | PC+PEI | 2 | 218 | 04-24-2013 | |
NblB family | Osc7112_0710 | YP_007113716.1 | Oscillatoria nigro-viridis | PCC7112 | PC+PEI | 2 | 224 | 04-24-2013 | |
NblB family | ZP_20934124 | ZP_20934124.1 | Microcystis aeruginosa | TAIHU98 | PC | 1 | 221 | 04-24-2013 | |
NblB family | Syn7509DRAFT_00041170 | ZP_21039471.1 | Synechocystis sp. | PCC7509 | PC | 220 | 04-24-2013 | ||
NblB family | Ple7327_1847 | YP_007080751.1 | Pleurocapsa sp. | PCC7327 | PC+PEI | 219 | 04-24-2013 | ||
NblB family | Lepto7376_0558 | YP_007069818.1 | Leptolyngbya sp. | PCC7376 | PC+PEI | 218 | 04-24-2013 | ||
NblB family | Xen7305DRAFT_00012810 | ZP_21056844.1 | Xenococcus sp. | PCC7305 | PC+PEI | 219 | 04-24-2013 | ||
NblB family | Glo7428_4688 | YP_007130281.1 | Gloeocapsa sp. | PCC7428 | PC | 223 | 04-24-2013 | ||
NblB family | Chro_0989 | YP_007090391.1 | Chroococcidiopsis thermalis | PCC7203 | PC+PEC | 219 | 04-24-2013 | ||
NblB family | Riv7116_0216 | YP_007053370.1 | Rivularia sp. | PCC7116 | PC+PEC | 218 | 04-24-2013 | ||
NblB family | GLO73106DRAFT_00006030 | ZP_21052179.1 | Gloeocapsa sp. | PCC73106 | PC+PEI | 218 | 04-24-2013 | ||
NblB family | PCC7418_1214 | YP_007167630.1 | Halothece sp. | PCC7418 | PC | 224 | 04-24-2013 | ||
NblB family | ZP_18908692 | ZP_18908692.1 | Leptolyngbya sp. | PCC7375 | PC+PEI | 2 | 223 | 04-24-2013 | |
NblB family | Cyast_1913 | YP_007165517.1 | Cyanobacterium stanieri | PCC7202 | PC | 221 | 04-24-2013 | ||
NblB family | Dacsa_1202 | YP_007171258.1 | Dactylococcopsis salina | PCC8305 | 224 | 04-24-2013 | |||
NblB family | Cal7507_1540 | YP_007064834.1 | Calothrix sp. | PCC7507 | PC+PEC | 220 | 04-29-2013 | ||
NblB family | Sta7437_3389 | YP_007133861.1 | Stanieria cyanosphaera | PCC7437 | PC+PEI | 220 | 04-29-2013 | ||
NblB family | MICCA_930006 | ZP_18815469.1 | Microcystis aeruginosa | PCC9432 | PC | 1 | 221 | 04-29-2013 | |
NblB family | Nos7107_4026 | YP_007051729.1 | Nostoc sp. | PCC7107 | PC+PEC | 221 | 04-29-2013 | ||
NblB family | Cri9333_0875 | YP_007141302.1 | Crinalium epipsammum | PCC9333 | PC | 221 | 04-29-2013 | ||
NblB family | Cal6303_0988 | YP_007136025.1 | Calothrix sp. | PCC6303 | PC+PEI | 2 | 218 | 04-29-2013 | |
NblB family | Cyan10605_2137 | YP_007162269.1 | Cyanobacterium aponimum | PCC10605 | 219 | 04-29-2013 | |||
NblB family | Oscil6304_1780 | YP_007085378.1 | Oscillatoria acuminata | PCC6304 (SAG 1449-3) | PC | 222 | 04-29-2013 | ||
NblB family | GEI7407_0128 | YP_007107685.1 | Geitlerinema sp. | PCC7407 | PC | 220 | 04-29-2013 | ||
NblB family | Lep6406DRAFT_00023300 | ZP_21046418.1 | Leptolyngbya sp. | PCC6406 | PC+PEC | 220 | 04-29-2013 | ||
NblB family | Syn6312_0129 | YP_007059926.1 | Synechococcus sp. | PCC6312 | PC | 222 | 04-29-2013 | ||
NblB family | Cha6605_0245 | YP_007095074.1 | Chamaesiphon minutus | PCC6605 | PC+PEI | 213 | 04-29-2013 | ||
NblB family | LepboDRAFT_1028 | Leptolyngbya boryana | PCC6306 | PC | 219 | 06-11-2013 | |||
NblB family | Fis9431DRAFT_1583 | Fischerella sp. | PCC9431 | PC+PEC | 221 | 06-12-2013 | |||
NblB family | FIS9605DRAFT_03310 | Fischerella sp. | PCC9605 | PC+PEC | 220 | 06-12-2013 | |||
NblB family | FisPCC73103_7578 | Fischerella muscicola | PCC73103 (SAG 1427-1) | PC+PEC | 221 | 06-12-2013 | |||
NblB family | Scytonema_PCC7110_joined_5306 | Scytonema hofmanni | PCC7110 | PC+PEC | 226 | 06-12-2013 | |||
NblB family | Osc10802DRAFT_5396 | Oscillatoria sp. | PCC10802 | PC+PEI | 336 | 06-12-2013 | |||
NblB family | PCC9339DRAFT_01092 | Fischerella sp. | PCC9339 | PC+PEC | 221 | 06-12-2013 | |||
NblB family | Ana7108_1853 | Anabaena sp. | PCC7108 | PC+PEC | 218 | 06-12-2013 | |||
NblB family | Chloroglopsis_PCC9212_joined_453 | Chlorogloeopsis sp. | PCC9212 | PC+PEC | 221 | 06-12-2013 | |||
NblB family | UYC_04806 | Chlorogloeopsis fritschii | PCC6912 | PC+PEC | 221 | 06-12-2013 | |||
NblB family | FisPCC7414_2854 | Fischerella muscicola | PCC7414 | PC+PEC | 221 | 06-12-2013 | |||
NblB family | Fischerella_sp._PCC7521_5286 | Fischerella thermalis | PCC7521 | PC+PEC | 221 | 06-12-2013 | |||
NblB family | Syn7502_00033 | YP_007104343.1 | Synechococcus sp. | PCC7502 | PC | 219 | 06-20-2013 | ||
NblB family | Pse7367_2182 | YP_007102874.1 | Pseudanabaena sp. | PCC7367 | PC+PEI | 241 | 06-20-2013 | ||
NblB family | Pse7429DRAFT_0756 | ZP_21065042.1 | Pseudanabaena sp. (biceps) | PCC7429 | PC | 225 | 06-20-2013 |
Model strains, Marine strains
Last update: 17 Dec 2019 8:00:11