CyanoLyase

All phycobilin lyases and related proteins

Description

This list allows users to retrieve any sequence from any organism included in the database by its locus tag/orf id or Genbank number when available.

Showing only unsure genes

` " ( $ $ ( ` ` ! ! $
Gene Locus tag Genbank Species Strain PBP in rods Pigment type Remark Length Last change
CpcE/RpcE family WH7805_06756 ZP_01123351.1 Synechococcus sp. WH7805 PC+PEI 2 The R-PC-III present in this strain has a PCB:PEB ratio of 2:1 (Sidler, 1994). It is unclear whether WH7805 has CpcE/F or RpcE/F but the presence of CpcT (and not RpcT) however argues for the following pigmentation: alpha-84=PEB; beta-84=PCB; beta-155=PCB. 265 09-19-2012
CpcE/RpcE family SynRCC307_2066 YP_001228322.1 Synechococcus sp. RCC307 PC+PEI+PEII 3b Unclear whether this strain has CpcE/F or RpcE/F 274 12-06-2011
CpcE/RpcE family S7335_2363ZP_05035931.1 Synechococcus sp. PCC7335 PC+PEI CA3 CpcEII or RpcE 274 12-06-2011
CpcE-I subfamily N9414_13270 ZP_01632751.1 Nodularia spumigena CCY9414 PC 1 Sequence incomplete: lacks C-term (end of contig) 158 01-10-2012
CpcE-I subfamily CYB_2736 YP_478924.1 Synechococcus sp. JA-2-3B'a(2-13) PC 1 This is a second copy of cpcE (cpcE-2) NOT associated with a cpcF 276 12-06-2011
CpcE-I subfamily CYA_2040 YP_475443.1 Synechococcus sp. JA-3-3Ab PC 1 This is a second copy of cpcE (cpcE-2) NOT associated with a cpcF 275 12-06-2011
CpcE-I subfamily CMJ043C Cyanidioschyzon merolae 10D PC 1 Distantly related to cyanobacterial CpcE : many insertions in matching sequences and much longer N-term, found by tblastn 516 02-21-2012
CpcE-I subfamily CWATWH0003_3128t1 EHJ12159.1 Crocosphaera watsonii WH0003 PC+PEI Incomplete (end of contig) 212 02-22-2012
CpcE-I subfamily ZP_18907676 ZP_18907676.1 Leptolyngbya sp. PCC7375 PC+PEI 2 Low protomatch score 279 06-20-2013
CpcE-I subfamily Pse7367_3924 YP_007083576.1 Pseudanabaena sp. PCC7367 PC+PEI 2 copies? 303 06-20-2013
CpcE-I subfamily Pse7367_2387 YP_007103076.1 Pseudanabaena sp. PCC7367 PC+PEI 2 copies? 273 06-20-2013
CpcF/RpcF family WH7805_06761 ZP_01123352.1 Synechococcus sp. WH7805 PC+PEI 2 Unclear whether this strain has CpcE/F or RpcE/F. Two possibilities:
a-84 and b-84 = PCB; b-155 = PEB
a-84 = PEB,b-84 and b-155 = PCB
212 12-06-2011
CpcF/RpcF family SynRCC307_2067 YP_001228323.1 Synechococcus sp. RCC307 PC+PEI+PEII 3b Unclear whether this strain has CpcE/F or RpcE/F 218 12-06-2011
CpcF/RpcF family S7335_4405 ZP_05037964.1 Synechococcus sp. PCC7335 PC+PEI CA3 CpcFII or RpcF 225 12-06-2011
CpcF-I subfamily CMJ044C Cyanidioschyzon merolae 10D PC 1 found by tblastn 312 02-21-2012
CpeY family CwatDRAFT_0665 ZP_0051842.1/td> Crocosphaera watsonii WH8501 PC+PEI There is another partial CpeY sequence in this genome almost 100% identical to this one (possibly an assembly error). 419 08-27-2012
CpeY family CwatDRAFT_5980 ZP_00514215.1 Crocosphaera watsonii WH8501 PC+PEI Sequence incomplete. N-term extended (35 aa added) but still incomplete. 282 08-27-2012
CpeZ family CwatDRAFT_0406 ZP_00518848.1 Crocosphaera watsonii WH8501 PC+PEI Low score, similar to Tery_0980 (IMS101) 219 12-02-2011
CpeZ family Tery_0980 YP_720834.1 Trichodesmium erythraeum IMS101 PC+PEI Blastp hit on cpeZ (but lower than >Tery_0995) 219 09-26-2011
CpeZ family CAJ73184.1| CAJ73184.1 Guillardia theta CCMP2712 Cr-PE 545 n.a. Low protoscan score 229 10-28-2011
CpeZ family CWATWH0003_5315a1 EHJ09924.1 Crocosphaera watsonii WH0003 PC+PEI Incomplete, 2nd copy? 186 02-22-2012
PecF family Aazo_0293 YP_003720001.1 Anabaena (Nostoc) azollae 0708 PC+PEC Sequence with an N-term shorter than others (seemingly lacks about 22 otherwise conserved aa) but no obvious problem in genome sequence. The missing N-term contains 3 or 4 His in other strains. 151 08-28-2012
CpeF family S7335_4282 ZP_05037842.1 Synechococcus sp. PCC7335 PC+PEI CA3 Low blast and protomatch score. 332 01-02-2012
CpeF family Tery_0978 YP_720832.1 Trichodesmium erythraeum IMS101 PC+PEI N-term shortened (24 aa removed) 310 08-30-2012
CpeF family Tery_0987 YP_720840.1 Trichodesmium erythraeum IMS101 PC+PEI Best BlastP hit on CpeF (but lower than Tery_0978) 285 08-30-2012
CpeF family CWATWH0003_5310t4 EHJ09925.1 Crocosphaera watsonii WH0003 PC+PEI incomplete n-term (start of contig) 262 02-22-2012
L8106_11777 homologs family AplaP_010100002137 ZP_06380464.1 Arthrospira (Spirulina) platensis Paraca PC 1 Incomplete n-term (end of contig). Almost identical to homologs in other Arthrospira species. 179 08-27-2012
L8106_22089 homologs family CwatDRAFT_0171 ZP_00519405.1 Crocosphaera watsonii WH8501 PC+PEI split between 3 different contigs: ZP_00517336.1 (CwatDRAFT_2581), ZP_00513741.1 (CwatDRAFT_6637) and ZP_00519405.1 (CwatDRAFT_0171) 107 08-29-2012
L8106_22089 homologs family IPF_5551 CAO86824.1 Microcystis aeruginosa PCC7806 PC 1 Incomplete sequence. Another chunk is in IPF_6118 (CAO87604.1) 325 01-10-2012
L8106_22089 homologs family IPF_6118 CAO87604.1 Microcystis aeruginosa PCC7806 PC 1 Shorter than other L8106_22089 homologs 251 04-24-2013
MC7420_3535 homologs family alr2986 NP_487026.1 Anabaena (Nostoc) sp. PCC7120 PC+PEC 885 12-07-2011
MC7420_3535 homologs family AmaxDRAFT_0188 ZP_03271372.1 Arthrospira (Spirulina) maxima CS-328 PC 1 786 12-07-2011
MC7420_3535 homologs family PCC7424_1763 YP_002377065.1 Cyanothece sp. PCC7424 PC+PEI 2 1475 12-07-2011
MC7420_3535 homologs family PCC8801_0753 YP_002370992.1 Cyanothece sp. PCC8801 PC+PEI 2 838 12-07-2011
MC7420_3535 homologs family L8106_24365 ZP_01619849.1 Lyngbya aestuarii CCY9616 (PCC8106/CCY8106) PC 1 1044 12-07-2011
MC7420_3535 homologs family MC7420_2915 ZP_05024179.1 Microcoleus chthonoplastes PCC7420 PC+PEC 1355 12-07-2011
MC7420_3535 homologs family IPF_2635 CAO90934.1 Microcystis aeruginosa PCC7806 PC 1 Much shorter than other MC7420_3535 homologs 263 12-07-2011
MC7420_3535 homologs family LYNGBM3L_40770 ZP_08429450.1 Lyngbya majuscula 3L PC+PEI 2 1273 12-07-2011
MC7420_3535 homologs family OSCI_440025 ZP_07108865.1 Oscillatoria sp. PCC6506 (PCC9029/ATCC29081 /UTEX 1547) PC 1 992 12-07-2011
MC7420_4701 homologs family MC7420_1061 ZP_05028540.1 Microcoleus chthonoplastes PCC7420 PC+PEC This sequence has a much shorter N-term than others. But not a frameshift. 173 09-11-2012
CotB homologs 1 family Cyan7425_3615 YP_002484296.1 Cyanothece sp. PCC7425 PC 1 221 09-26-2011
CotB homologs 1 family Synpcc7942_2325 YP_401342.1 Synechococcus elongatus PCC7942 PC 1 N-term shortened (30 aa removed : MASAIAKLSAAPASVTPCGSVKDERLSCAS) 225 08-28-2012
CotB homologs 1 family syc1777_d YP_172487.1 Synechococcus elongatus PCC6301 (ATCC 27144) PC 1 225 09-26-2011
CotB homologs 2 family>a0href="/gene/712/AM1_0043">AM1_0043 YP_001514445.1 Acaryochloris marina MBIC11017 (AM1) PC 1 221 09-26-2011
CotB homologs 2 family gvip128 NP_923927.1 Gloeobacter violaceus PCC7421 PC+PEI 2 233 11-24-2011
CotB homologs 2 family gvip219 NP_924521.1 Gloeobacter violaceus PCC7421 PC+PEI 2 234 11-24-2011
CotB homologs 2 family CMS328C Cyanidioschyzon merolae 10D PC 1 on contig c19f0009, found by tblastn 332 02-21-2012
CotB homologs 2 family CMM226C Cyanidioschyzon merolae 10D PC 1 on contig c13f0002, found by tblastn 420 02-21-2012
CotB homologs 2 family ACCM5_010100026572 ZP_09250884.1 Acaryochloris sp. CCMEE5410 APC only 221 01-24-2012
CotB homologs 2 family AplaP_010100006817 ZP_06381377.1 Arthrospira (Spirulina) platensis Paraca PC 1 Incomplete - lacks C-term (end of contig)154 09-13-2012
CpcS family AM1_4215 YP_001518512.1 Acaryochloris marina MBIC11017 (AM1) PC 1 1st copy, strange position in phylogeny. By blast: closer from CpcSI. 197 08-20-2012
CpcS family AM1_C0217 YP_001521653.1 Acaryochloris marina MBIC11017 (AM1) PC 1 2nd copy,strange position in phylogeny. By blast: closer from CpcSI. Located on preb3 plasmid. 208 08-20-2012
CpcS family CMR092C Cyanidioschyzon merolae 10D PC 1 long N-term compared to cyanobacterial CpcS sequences, found by tblastn 405 02-21-2012
CpcS-I subfamily gvip161 NP_924137.1 Gloeobacter violaceus PCC7421 PC+PEI 2 strange position in phylo 201 11-24-2011
CpcS-I subfamily Npun_F3809 YP_001867136.1 Nostoc punctiforme ATCC29133 (PCC73102) PC+PEI 2 CpcSIII in Schluchter et al., 2010? 206 09-26-2011
CpcS-I subfamily ACCM5_010100032969 ZP_09252138.1 Acaryochloris sp. CCMEE5410 APC only 196 08-24-2012
CpcS-III subfamily Mic7113_0798 YP_007120112.1 Microcoleus sp. PCC7113 PC+PEI 2 Found both CpcS-I and CpcS-III in this strain? 188 06-20-2013
CpcU-I subfamily AM1_5938 YP_001520196.1 Acaryochloris marina MBIC11017 (AM1) PC 1 N-term extended (22 aa added). Low blast and protomatch score with other CpcU-I sequences. 184 09-16-2012
CpcU-I subfamily LYNGBM3L_17960 ZP_08426426.1 Lyngbya majuscula 3L PC+PEI 2 Protomata tells it is CpcU.
Blast tells it is CpcSIII (but with a 17aa gap)
190 10-19-2011
CpcU-I subfamily ACCM5_010100021921 ZP_09249963.1 Acaryochloris sp. CCMEE5410 APC only 184 01-24-2012
CpcU-I subfamily Dacsa_0519 YP_007170660.1 Dactylococcopsis salina PCC8305 190 06-20-2013
CpcU-I subfamily PCC7418_3771 YP_007170089.1 Halothece sp. PCC7418 PC 179 06-20-2013
CpcU-II subfamily CPCC7001_xx Cyanobium sp. PCC7001 PC 1 Found using tblastn. Orf not detected in refseq. 166 02-21-2012
CpeS-I subfamily gi|145967347|gb|ABP99029.1| ABP99029.1 Fremyella diplosiphon (Tolypothrix sp. / Calothrix sp.) Fd33 (UTEX481/PCC7601) PC+PEI CA3 N-term shortened (6 aa removed: METKVL). C-term much longer than in other CpeS-I sequences and also includes a specific sequence at between aa 103-112. 215 09-17-2012
CpcT family CMK263C Cyanidioschyzon merolae 10D PC 1 found by tblastn 263 02-21-2012
CpcT family GTHECHR1104 XP_001713602.1 Guillardia theta CCMP2712 Cr-PE 545 n.a. Low protoscan score but best BLASTP match to the CpcT family. This cpcT-like gene was characterized by complementation of Synechocystis sp. PCC6803 cpcT (Bolte et al. 2008). However, since G. theta possesses PE (Cr-PE 545) not PC, the function of this gene (despite its closest similarity to cpcT than cpeT families) must likely be to attach a PEB at Cys-159 of beta-PE. 222 09-28-2012
CpcT family HAN_1g134 XP_001712298.1 Hemiselmis andersenii CCMP644 Cr-PE 555 n.a. 221 01-24-2012
CpcT family Pse7367_2699 YP_007103382.1 Pseudanabaena sp. PCC7367 PC+PEI Low protomatch score 202 06-20-2013
CpeT family CwatDRAFT_5720 ZP_00514725.1 Crocosphaera watsonii WH8501 PC+PEI Similar to CpeT, but with a 51 aa deletion in the middle. N- and C-term closely related to WH0003 cpeT sequence.149 09-26-2012
T homologs family Syn6312_3060 YP_007062655.1 Synechococcus sp. PCC6312 PC 192 06-12-2013

Model strain Model strains, Marine strains

Biogenouest Station biologique de Roscoff ANR

Copyright © 2005-2012 Biogenouest® - Legal notice - Contact : Contact GenOuest

Hosted by the GenOuest bioinformatics platform