CyanoLyase

PCC7942 strain Model strain

Lineage

  • Prokarya
    • Cyanobacteria
      • Chroococcales
        • Synechococcus
          • elongatus

Strain information

Subcluster: 1.1

Phycobiliprotein types: PC

Pigment type: 1

Habitat: freshwater

Remark: Strain in which cpcE/F (Bhalerao et al, 1994) and NblB (Dolganov & Grossman, 1999) have been characterized.

Genome sequence

Refseq record: NC_007604

Genome status: complete

Sequencing center: JGI

References

  • Bhalerao et al., 1994. Cloning of the cpcE and cpcF genes from Synechococcus sp. PCC 6301 and their inactivation in Synechococcus sp. PCC 7942 Plant Mol Biol, 26, 313-326.
  • Delaye et al., 2011. Blueprint for a minimal photoautotrophic cell: conserved and variable genes in Synechococcus elongatus PCC 7942 BMC Genomics, 12, 25.
  • Dolganov et al., 1999. A polypeptide with similarity to phycocyanin alpha-subunit phycocyanobilin lyase involved in degradation of phycobilisomes J Bacteriol, 181, 610-617.

Gene Locus tag Genbank Remark Length Last change
CpcS-I subfamily Synpcc7942_2031 YP_401048.1 193 09-26-2011
CpcT family Synpcc7942_0800 YP_399819.1 197 08-28-2012
CpcU-I subfamily Synpcc7942_0161 YP_399180.1 N-term possibly 12 aa too long (MGDSKGRVASAA). Fairly low blast score to other CpcU-I sequences. 180 09-16-2012
CpcV family Synpcc7942_0364 YP_399383.1 183 09-26-2011
IaiH family Synpcc7942_1752 YP_400769.1 250 10-26-2011
CotB homologs 1 family Synpcc7942_2325 YP_401342.1 N-term shortened (30 aa removed : MASAIAKLSAAPASVTPCGSVKDERLSCAS) 225 08-28-2012
CpcE-I subfamily Synpcc7942_1054 YP_400071.1 273 09-26-2011
CpcF-I subfamily Synpcc7942_1055 YP_400072.1 207 09-26-2011
T homologs family Synpcc7942_0772 YP_399791.1 197 09-26-2011
NblB family Synpcc7942_1823 YP_400840.1 219 08-28-2012
CpcS homologs family Synpcc7942_1167 YP_400184.1 185 11-16-2011
CotB homologs 2 family Synpcc7942_1721 YP_400738.1 234 11-24-2011

Model strain Model strains, Marine strains

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