CyanoLyase

PCC7113 strain

[fasta] [gff] [only sure] [only unsure]

Lineage

Prokarya

Cyanobacteria

Oscillatoriales

Microcoleus

sp.

Strain information

Phycobiliprotein types: PC+PEI

Pigment type: 2

Habitat: soil, orchid house

Remark: contains 8 plasmids

Genome sequence

Refseq record: NC_019738

Genome status: complete

Sequencing center: JGI

References

Shih et al., 2013. Improving the coverage of the cyanobacterial phylum using diversity-driven genome sequencing Proc Natl Acad Sci U S A, 110, 1053-1058.

Gene	Locus tag	Genbank	Remark	Length	Last change
CpcS-I subfamily	Mic7113_2585	YP_007121784.1		205	04-23-2013
CpcV family	Mic7113_6350	YP_007125343.1		181	04-23-2013
CpcT family	Mic7113_5097	YP_007124160.1		196	04-23-2013
CpeT family	Mic7113_4757	YP_007123836.1		206	04-23-2013
CpcE-I subfamily	Mic7113_2593	YP_007121792.1		284	04-23-2013
CpcF-I subfamily	Mic7113_2594	YP_007121793.1		213	04-23-2013
CpeY family	Mic7113_4748	YP_007123827.1		426	04-23-2013
CpeZ family	Mic7113_4747	YP_007123826.1		204	04-23-2013
CpeF family	Mic7113_4746	YP_007123825.1		303	04-24-2013
IaiH family	Mic7113_3327	YP_007122465.1		252	04-24-2013
NblB family	Mic7113_4080	YP_007123190.1		218	04-24-2013
CpeS-I subfamily	Mic7113_4756	YP_007123835.1		175	04-24-2013
T homologs family	Mic7113_5401	YP_007124450.1		204	04-24-2013
L8106_16949 homologs family	Mic7113_0135	YP_007119479.1		434	04-24-2013
CotB family	Mic7113_4739	YP_007123818.1		227	04-24-2013
CotB homologs 2 family	Mic7113_0797	YP_007120111.1		223	04-24-2013
CpeU-I subfamily	Mic7113_4742	YP_007123821.1		204	04-24-2013
CpcS-III subfamily	Mic7113_0798	YP_007120112.1	Found both CpcS-I and CpcS-III in this strain?	188	06-20-2013

Model strains, Marine strains

Last update: 13 Jun 2013 9:30:44

Station biologique de Roscoff

Copyright © 2005-2012 Biogenouest® - Legal notice - Contact :

Hosted by the GenOuest bioinformatics platform