CyanoLyase

CpcS-I subfamily

Description

Classification proposed by Shen et al. (2008) and Schluchter et al. (2010). CpcS-I forms a heterodimer with CpcU-I in Synechococcus sp. PCC 7002 (Saunée et al., 2008; Shen et al., 2008). All strains containing a CpcS-I homolog also possess a CpcU-I homolog, except PCC7335 (see phyletic profiles).

References

  • Saunée et al., 2008. Biogenesis of phycobiliproteins: II. CpcS-I and CpcU comprise the heterodimeric bilin lyase that attaches phycocyanobilin to Cys-82 of beta-phycocyanin and Cys-81 of allophycocyanin subunits in Synechococcus sp. PCC 7002 J Biol Chem, 283, 7513-7522.

Gene Locus tag Genbank Species Strain PBP in rods Pigment type Remark Length Last change
CpcS-I subfamily S7335_4321 ZP_05037881.1 Synechococcus sp. PCC7335 PC+PEI CA3 This sequence is closely related to CpcS-I, but the genome of PCC7335 apparently does not contain any CpcU-I, possibly because it is incomplete. 200 10-03-2012
CpcS-I subfamily SYNPCC7002_A1822 YP_001735066.1 Synechococcus sp. PCC7002 PC 1 198 09-26-2011
CpcS-I subfamily slr2049 NP_440437.1 Synechocystis sp. PCC6803 (ATCC27184) PC 1 192 09-26-2011
CpcS-I subfamily AmaxDRAFT_2794 ZP_03273970.1 Arthrospira (Spirulina) maxima CS-328 PC 1 197 09-26-2011
CpcS-I subfamily CwatDRAFT_6342 ZP_00514111.1 Crocosphaera watsonii WH8501 PC+PEI 197 09-26-2011
CpcS-I subfamily cce_3207 YP_001804621.1 Cyanothece sp. ATCC51142 PC 1 198 09-26-2011
CpcS-I subfamily PCC7424_3509 YP_002378769.1 Cyanothece sp. PCC7424 PC+PEI 2 197 09-26-2011
CpcS-I subfamily PCC8801_1352 YP_002371570.1 Cyanothece sp. PCC8801 PC+PEI 2 200 09-26-2011
CpcS-I subfamily Cyan8802_1382 YP_003137135.1 Cyanothece sp. PCC8802 PC 1 200 09-26-2011
CpcS-I subfamily CY0110_04081 ZP_01730273.1 Cyanothece sp. CCY0110 PC 1 197 09-26-2011
CpcS-I subfamily Cyan7822_2533 YP_003887780.1 Cyanothece sp. PCC7822 PC+PEI 2 198 09-26-2011
CpcS-I subfamily gvip161 NP_924137.1 Gloeobacter violaceus PCC7421 PC+PEI 2 strange position in phylo 201 11-24-2011
CpcS-I subfamily GL6909_5285 Gloeothece sp. PCC6909/1 PC+PEI 2 198 05-31-2011
CpcS-I subfamily L8106_24665 ZP_01619909.1 Lyngbya aestuarii CCY9616 (PCC8106/CCY8106) PC 1 No other start codon before this sequence 197 09-26-2011
CpcS-I subfamily MAE_48330 YP_001659847.1 Microcystis aeruginosa NIES-843 PC 1 A stop codon, then 4aa, then the start codon 193 09-26-2011
CpcS-I subfamily Npun_F3809 YP_001867136.1 Nostoc punctiforme ATCC29133 (PCC73102) PC+PEI 2 CpcSIII in Schluchter et al., 2010? 206 09-26-2011
CpcS-I subfamily Synpcc7942_2031 YP_401048.1 Synechococcus elongatus PCC7942 PC 1 193 09-26-2011
CpcS-I subfamily syc2064_d YP_172774.1 Synechococcus elongatus PCC6301 (ATCC 27144) PC 1 193 11-25-2011
CpcS-I subfamily Tery_3908 YP_723414.1 Trichodesmium erythraeum IMS101 PC+PEI N-term shortened (5 aa removed: MEYRL) 196 08-30-2012
CpcS-I subfamily OSCI_700007 ZP_07109069.1 Oscillatoria sp. PCC6506 (PCC9029/ATCC29081 /UTEX 1547) PC 1 197 10-19-2011
CpcS-I subfamily LYNGBM3L_55940 ZP_08427741.1 Lyngbya majuscula 3L PC+PEI 2 216 10-19-2011
CpcS-I subfamily MicvaDRAFT_5174 ZP_08495221.1 Microcoleus vaginatus FGP-2 PC 1 198 10-20-2011
CpcS-I subfamily IPF_855 CAO87966.1 Microcystis aeruginosa PCC7806 PC 1 193 10-20-2011
CpcS-I subfamily NIES39_A02700 BAI88109.1 Arthrospira (Spirulina) platensis NIES-39 PC 1 197 10-20-2011
CpcS-I subfamily Cy51472DRAFT_4686 ZP_08975889.1 Cyanothece sp. ATCC51472 PC 1 198 01-10-2012
CpcS-I subfamily AplaP_010100006702 ZP_06381354.1 Arthrospira (Spirulina) platensis Paraca PC 1 197 01-24-2012
CpcS-I subfamily ACCM5_010100032969 ZP_09252138.1 Acaryochloris sp. CCMEE5410 APC only 196 08-24-2012
CpcS-I subfamily CWATWH0003_0565 EHJ14767.1 Crocosphaera watsonii WH0003 PC+PEI 197 02-22-2012
CpcS-I subfamily MICAI_250011 ZP_10228158.1 Microcystis sp. T1-4 PC+PEI 2 193 09-16-2012
CpcS-I subfamily MICAG_860004 CCI29527.1 Microcystis aeruginosa PCC9808 PC 1 193 08-22-2012
CpcS-I subfamily MICAB_3830008 CCH97799.1 Microcystis aeruginosa PCC9717 PC 1 193 08-23-2012
CpcS-I subfamily MICAK_3480004 CCI37760.1 Microcystis aeruginosa PCC9701 PC 1 193 08-23-2012
CpcS-I subfamily MICAC_4950001 CCI03754.1 Microcystis aeruginosa PCC9443 PC 1 193 08-23-2012
CpcS-I subfamily MICCA_980010 ZP_18815604.1 Microcystis aeruginosa PCC9432 PC 1 193 04-22-2013
CpcS-I subfamily MICAD_310004 CCI08315.1 Microcystis aeruginosa PCC7941 PC 1 193 08-23-2012
CpcS-I subfamily Osc7112_3154 YP_007115956.1 Oscillatoria nigro-viridis PCC7112 PC+PEI 2 198 04-22-2013
CpcS-I subfamily Sta7437_2864 YP_007133350.1 Stanieria cyanosphaera PCC7437 PC+PEI 199 04-22-2013
CpcS-I subfamily O53_3911 ZP_20934710.1 Microcystis aeruginosa TAIHU98 PC 1 193 04-22-2013
CpcS-I subfamily Lepto7376_3399 YP_007072440.1 Leptolyngbya sp. PCC7376 PC+PEI 200 04-23-2013
CpcS-I subfamily Cyast_1790 YP_007165395.1 Cyanobacterium stanieri PCC7202 PC 196 04-23-2013
CpcS-I subfamily Ple7327_2633 YP_007081472.1 Pleurocapsa sp. PCC7327 PC+PEI 198 04-23-2013
CpcS-I subfamily Xen7305DRAFT_00011740 ZP_21056994.1 Xenococcus sp. PCC7305 PC+PEI 199 04-23-2013
CpcS-I subfamily PCC7418_3218 YP_007169548.1 Halothece sp. PCC7418 PC 193 04-23-2013
CpcS-I subfamily GLO73106DRAFT_00025640 ZP_21050308.1 Gloeocapsa sp. PCC73106 PC+PEI 197 04-23-2013
CpcS-I subfamily Dacsa_0540 YP_007170680.1 Dactylococcopsis salina PCC8305 194 04-23-2013
CpcS-I subfamily Pse7367_3816 YP_007083475.1 Pseudanabaena sp. PCC7367 PC+PEI 208 04-23-2013
CpcS-I subfamily Mic7113_2585 YP_007121784.1 Microcoleus sp. PCC7113 PC+PEI 2 205 04-23-2013
CpcS-I subfamily ZP_18908102 ZP_18908102.1 Leptolyngbya sp. PCC7375 PC+PEI 2 204 04-23-2013
CpcS-I subfamily Pse7429DRAFT_3448 ZP_21067785.1 Pseudanabaena sp. (biceps) PCC7429 PC 200 04-24-2013
CpcS-I subfamily Oscil6304_1130 YP_007084776.1 Oscillatoria acuminata PCC6304 (SAG 1449-3) PC 203 04-29-2013
CpcS-I subfamily Cyan10605_0823 YP_007160999.1 Cyanobacterium aponimum PCC10605 194 04-29-2013
CpcS-I subfamily Cha6605_1319 YP_007096040.1 Chamaesiphon minutus PCC6605 PC+PEI 200 04-29-2013
CpcS-I subfamily LepboDRAFT_3190 Leptolyngbya boryana PCC6306 PC 195 06-11-2013
CpcS-I subfamily Osc10802DRAFT_6754 Oscillatoria sp. PCC10802 PC+PEI 204 06-12-2013
CpcS-I subfamily Cal6303_1002 YP_007136039.1 Calothrix sp. PCC6303 PC+PEI 2 196 06-20-2013
CpcS-I subfamily Lep6406DRAFT_00042270 ZP_21044550.1 Leptolyngbya sp. PCC6406 PC+PEC 198 06-20-2013

Model strain Model strains, Marine strains

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