WH7805 strain


  • Prokarya
    • Cyanobacteria
      • Chroococcales
        • Synechococcus
          • sp.

Strain information

Subcluster: 5.1

Clade/Ecotype: VI

Subclade: VIa

Phycobiliprotein types: PC+PEI

Pigment type: 2

Habitat: marine

Genome sequence

Refseq record: NZ_AAOK00000000

Genome status: assembled contigs

Sequencing center: JCVI


  • Dufresne et al., 2008. Unraveling the genomic mosaic of a ubiquitous genus of marine cyanobacteria Genome Biol, 9, R90.

Gene Locus tag Genbank Remark Length Last change
CpcS-II subfamily WH7805_11643 ZP_01122710.1 196 09-26-2011
CpcT family WH7805_06621 ZP_01123324.1 213 09-26-2011
CpeT family WH7805_06676 ZP_01123335.1 203 09-26-2011
CpeS-II subfamily WH7805_06671 ZP_01123334.1 178 09-26-2011
CpeU-II subfamily WH7805_06731 ZP_01123346.1 N-term extended (8 aa added) 193 09-17-2012
CpeY family WH7805_06686 ZP_01123337.1 427 09-26-2011
CpeZ family WH7805_06706 ZP_01123341.1 209 09-26-2011
CpeF family WH7805_06701 ZP_01123340.1 298 10-25-2011
IaiH family WH7805_12348 ZP_01122851.1 269 10-26-2011
CotB homologs 1 family WH7805_08566 ZP_01123713.1 208 09-26-2011
CpcE/RpcE family WH7805_06756 ZP_01123351.1 The R-PC-III present in this strain has a PCB:PEB ratio of 2:1 (Sidler, 1994). It is unclear whether WH7805 has CpcE/F or RpcE/F but the presence of CpcT (and not RpcT) however argues for the following pigmentation: alpha-84=PEB; beta-84=PCB; beta-155=PCB. 265 09-19-2012
CpcF/RpcF family WH7805_06761 ZP_01123352.1 Unclear whether this strain has CpcE/F or RpcE/F. Two possibilities:
a-84 and b-84 = PCB; b-155 = PEB
a-84 = PEB,b-84 and b-155 = PCB
212 12-06-2011
CpcU-II subfamily WH7805_05516 ZP_01124634.1 N-term shortened (7 aa removed: MSCEDGS) 153 09-16-2012

Model strain Model strains, Marine strains

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