CCMP2712 strain
[fasta] [gff] [only sure] [only unsure]
Lineage
- Eukarya
- Cryptophyta
- Pyrenomonadales
- Guillardia
- theta
Strain information
Phycobiliprotein types: Cr-PE 545
Pigment type: n.a.
Habitat: marine
Remark: Only the nucleomorph genome is available, so the phycobilin lyase set is only partial.
Genome sequence
Genome status: draft assembly
Sequencing center: JGI
References
- Bolte et al., 2008. Complementation of a phycocyanin-bilin lyase from Synechocystis sp. PCC 6803 with a nucleomorph-encoded open reading frame from the cryptophyte Guillardia theta BMC Plant Biol, 8, 56.
| Gene | Locus tag | Genbank | Remark | Length | Last change |
|---|---|---|---|---|---|
| CpcT family | GTHECHR1104 | XP_001713602.1 | Low protoscan score but best BLASTP match to the CpcT family. This cpcT-like gene was characterized by complementation of Synechocystis sp. PCC6803 cpcT (Bolte et al. 2008). However, since G. theta possesses PE (Cr-PE 545) not PC, the function of this gene (despite its closest similarity to cpcT than cpeT families) must likely be to attach a PEB at Cys-159 of beta-PE. | 222 | 09-28-2012 |
| CpeZ family | CAJ73184.1| | CAJ73184.1 | Low protoscan score | 229 | 10-28-2011 |
Model strains, Marine strains
Last update: 28 Sep 2012 7:49:23
