CpcU-II subfamily


Present only in marine Synechococcus and in Cyanobium spp. Not formally characterized yet but it likely forms a heterodimer with CpcS-II. Indeed, CpcU-II sequences are most closely related to CpcU-I and they have the same phyletic profile as CpcS-II.

Gene Locus tag Genbank Species Strain PBP in rods Pigment type Remark Length Last change
CpcU-II subfamily PCC_0138 YP_002048800.1 Paulinella chromatophora M0880 PC 1 157 09-16-2012
CpcU-II subfamily BL107_11196 ZP_01469616.1 Synechococcus sp. BL107 PC+PEI+PEII 3dA/CA4-A 154 11-04-2011
CpcU-II subfamily sync_0774 YP_729988.1 Synechococcus sp. CC9311 PC+PEI+PEII 3dA/CA4-A 158 11-04-2011
CpcU-II subfamily Syncc9605_0889 YP_381212.1 Synechococcus sp. CC9605 PC+PEI+PEII 3c 153 11-04-2011
CpcU-II subfamily Syncc9902_1509 YP_377511.1 Synechococcus sp. CC9902 PC+PEI+PEII 3dA/CA4-A 154 11-04-2011
CpcU-II subfamily SynRCC307_1726 YP_001227982.1 Synechococcus sp. RCC307 PC+PEI+PEII 3eA 151 11-04-2011
CpcU-II subfamily RS9916_33072 ZP_01470645.1 Synechococcus sp. RS9916 PC+PEI+PEII 3dA/CA4-A N-term possibly 12 aa too long 169 09-16-2012
CpcU-II subfamily RS9917_01916 ZP_01081335.1 Synechococcus sp. RS9917 PC 1 156 11-04-2011
CpcU-II subfamily WH5701_14506 ZP_01083946.1 Synechococcus sp. WH5701 PC 1 162 11-04-2011
CpcU-II subfamily SynWH7803_1725 YP_001225448.1 Synechococcus sp. WH7803 PC+PEI+PEII 3a 153 11-04-2011
CpcU-II subfamily WH7805_05516 ZP_01124634.1 Synechococcus sp. WH7805 PC+PEI 2 N-term shortened (7 aa removed: MSCEDGS) 153 09-16-2012
CpcU-II subfamily SYNW1611 NP_897704.1 Synechococcus sp. WH8102 PC+PEI+PEII 3c 154 11-04-2011
CpcU-II subfamily Syn8016DRAFT_2448 ZP_08957102.1 Synechococcus sp. WH8016 PC+PEI+PEII 3aA 158 12-02-2011
CpcU-II subfamily SH8109_1400 ZP_05790078.1 Synechococcus sp. WH8109 PC+PEI+PEII 3bB 153 12-02-2011
CpcU-II subfamily SCB02_010100006257 ZP_07970508.1 Synechococcus sp. CB0205 PC+PEI 2 154 12-02-2011
CpcU-II subfamily SCB01_010100010455 ZP_07974079.1 Synechococcus sp. CB0101 PC 1 161 12-02-2011
CpcU-II subfamily CPCC7001_xx Cyanobium sp. PCC7001 PC 1 Found using tblastn. Orf not detected in refseq. 166 02-21-2012
CpcU-II subfamily Cyagr_1229 YP_007045748.1 Cyanobium gracile PCC6307 PC 177 04-29-2013

Model strain Model strains, Marine strains

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