CyanoLyase

Phyletic profiles

This table shows the distribution of phycobilin lyases or related proteins in the different genomes of the CyanoLyase database. Co-occurrence of sequences in sets of genomes sharing similar characteristics can easily be spotted and this tool is therefore useful to predict potential heterodimers. An example of this is the previously undescribed CpcSII/CpcUII pair, which reminds the CpcSI/CpcUI heterodimer, recently characterized in Synechococcus sp. PCC 7002 (Saunée et al. 2008, Shen et al. 2008).

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Phylum Order Species Strain Subcluster Clade Ecotype PBP in rods Habitat Pigment type CpcS family CpcS-I subfamily CpcS-II subfamily CpcS-III subfamily CpcU-I subfamily CpcU-II subfamily CpeS-I subfamily CpeS-II subfamily CpeS-ProHL subfamily CpeU-I subfamily CpeU-II subfamily CpcS homologs family CpcV family CpcT family CpeT family RpcT family T homologs family CpcE/RpcE family CpcE-I subfamily CpcE-II subfamily RpcE subfamily CpcF/RpcF family CpcF-I subfamily CpcF-II subfamily RpcF subfamily CpeY family CpeZ family PecE family PecF family RpcG family CpeF family MpeU family MpeW family MpeY family MpeZ family IaiH family L8106_11777 homologs family L8106_16949 homologs family L8106_22089 homologs family MC7420_3535 homologs family MC7420_4701 homologs family CotB family CotB homologs 1 family CotB homologs 2 family NblB family
Cyanobacteria Chroococcales Synechococcus sp. CC9311 [fasta] 5.1 I PC+PEI+PEII marine 3d/CA4 - - 1 - - 1 - 1 - - 1 - - - 1 1 - - - - 1 - - - 1 1 1 - - - 1 1 - 1 1 1 - - - - - - 1 - -
Cyanobacteria Chroococcales Synechococcus sp. CC9605 [fasta] 5.1 II PC+PEI+PEII marine 3c - - 1 - - 1 - 1 - - 1 - - - 1 1 - - - - - - - - - 1 1 - - 1 - 1 - 1 - 1 - - - - - - 1 - -
Cyanobacteria Chroococcales Synechococcus sp. WH8109 [fasta] 5.1 II PC+PEI+PEII marine 3b - - 1 - - 1 - 1 - - 1 - - - 1 1 - - - - 1 - - - 1 1 1 - - - - 1 1 1 - 1 - - - - - - 1 - -
Cyanobacteria Chroococcales Synechococcus sp. WH8102 [fasta] 5.1 III PC+PEI+PEII marine 3c - - 1 - - 1 - 1 - - 1 - - - 1 1 - - - - - - - - - 1 1 - - 1 - 1 - 1 - 1 - - - - - - 1 - -
Cyanobacteria Chroococcales Synechococcus sp. CC9902 [fasta] 5.1 IV PC+PEI+PEII marine 3d/CA4 - - 1 - - 1 - 1 - - 1 - - - 1 1 - - - - 1 - - - 1 1 1 - - - 1 1 - 1 1 1 - - - - - - 1 - -
Cyanobacteria Chroococcales Synechococcus sp. BL107 [fasta] 5.1 IV PC+PEI+PEII marine 3d/CA4 - - 1 - - 1 - 1 - - 1 - - - 1 1 - - - - - - - - - 1 1 - - 1 1 1 - 1 1 1 - - - - - - 1 - -
Cyanobacteria Chroococcales Synechococcus sp. WH7803 [fasta] 5.1 V PC+PEI+PEII marine 3a - - 1 - - 1 - 1 - - 1 - - - 1 1 - - - - 1 - - - 1 1 1 - - - 1 - - 1 - 1 - - - - - - 1 - -
Cyanobacteria Chroococcales Synechococcus sp. WH7805 [fasta] 5.1 VI PC+PEI marine 2 - - 1 - - 1 - 1 - - 1 - - 1 1 - - 1 - - - 1 - - - 1 1 - - - 1 - - - - 1 - - - - - - 1 - -
Cyanobacteria Chroococcales Synechococcus sp. RS9917 [fasta] 5.1 VIII PC marine 1 - - 1 - - 1 - - - - - - - 1 - - - - - 1 - - - 1 - - - - - - - - - - - 1 - - - - - - 1 - -
Cyanobacteria Chroococcales Synechococcus sp. RS9916 [fasta] 5.1 IX PC+PEI+PEII marine 3d/CA4 - - 1 - - 1 - 1 - - 1 - - 1 1 1 - - - - - - - - - 1 1 - - 1 1 1 - 1 1 1 - - - - - - 1 - -
Cyanobacteria Chroococcales Synechococcus sp. WH5701 [fasta] 5.2 PC marine 1 - - 1 - - 1 - - - - - - - 1 - - - - - 1 - - - 1 - - - - - - - - - - - 1 - - - - - - 1 - -
Cyanobacteria Chroococcales Synechococcus sp. RCC307 [fasta] 5.3 5.3-I PC+PEI+PEII marine 3b - - 1 - - 1 - 1 - - 1 - - 1 1 - - 1 - - - 1 - - - 1 1 - - - 1 1 - 1 1 1 - - - - - - 1 - -
Cyanobacteria Chroococcales Synechococcus sp. CB0101 [fasta] 5.2 CB4 PC marine 1 - - 1 - - 1 - - - - - - - 1 - - - - - 1 - - - 1 - - - - - - - - - - - 1 - - - - - - 1 - -
Cyanobacteria Chroococcales Synechococcus sp. CB0205 [fasta] 5.2 CB5 PC+PEI marine 2 - - 1 - - 1 - 1 - - 1 - - 1 1 - - - - 1 - - - 1 - 1 1 - - - 1 - - - - 1 - - - - - - 1 - -
Cyanobacteria Chroococcales Synechococcus sp. PCC7335 [fasta] 4 PC+PEI marine CA3 - 1 - - - - 1 - - 1 - 1 1 1 1 - 1 1 - - - 1 - - - 1 1 - - - 2 - - - - 1 - 1 - - - 1 - 1 1
Cyanobacteria Chroococcales Synechococcus sp. PCC7002 [fasta] 3 PC marine halotolerant 1 - 1 - - 1 - - - - - - - 1 1 - - - - 1 - - - 1 - - - - - - - - - - - - 1 - 1 - - - - - 1 1
Cyanobacteria Chroococcales Cyanobium sp. PCC7001 [fasta] Cbm 2 PC marine 1 - - 1 - - 1 - - - - - - - 1 - - - - - 1 - - - 1 - - - - - - - - - - - 1 - - - - - - 1 - -
Cyanobacteria Chroococcales Synechococcus sp. WH8016 [fasta] 5.1 I PC+PEI+PEII marine 3a - - 1 - - 1 - 1 - - 1 - - - 1 1 - - - - 1 - - - 1 1 1 - - - 1 - - 1 - 1 - - - - - - 1 - -
Cyanobacteria Chroococcales Prochlorococcus marinus MED4 [fasta] (CCMP1986/CCMP1378) Pro HLI beta-PEIII marine low b/a - - - - - - - - 1 - - - - - - - - - - - - - - - - - - - - - - - - - - 1 - - - - - - - - -
Cyanobacteria Chroococcales Prochlorococcus marinus MIT9515 [fasta] Pro HLI beta-PEIII marine low b/a - - - - - - - - 1 - - - - - - - - - - - - - - - - - - - - - - - - - - 1 - - - - - - - - -
Cyanobacteria Chroococcales Prochlorococcus marinus MIT9301 [fasta] Pro HLII beta-PEIII marine low b/a - - - - - - - - 1 - - - - - - - - - - - - - - - - - - - - - - - - - - 1 - - - - - - - - -
Cyanobacteria Chroococcales Prochlorococcus marinus AS9601 [fasta] Pro HLII beta-PEIII marine low b/a - - - - - - - - 1 - - - - - - - - - - - - - - - - - - - - - - - - - - 1 - - - - - - - - -
Cyanobacteria Chroococcales Prochlorococcus marinus MIT9215 [fasta] Pro HLII beta-PEIII marine low b/a - - - - - - - - 1 - - - - - - - - - - - - - - - - - - - - - - - - - - 1 - - - - - - - - -
Cyanobacteria Chroococcales Prochlorococcus marinus MIT9312 [fasta] Pro HLII beta-PEIII marine low b/a - - - - - - - - 1 - - - - - - - - - - - - - - - - - - - - - - - - - - 1 - - - - - - - - -
Cyanobacteria Chroococcales Prochlorococcus marinus MIT9202 [fasta] Pro HLII beta-PEIII marine low b/a - - - - - - - - 1 - - - - - - - - - - - - - - - - - - - - - - - - - - 1 - - - - - - - - -
Cyanobacteria Chroococcales Prochlorococcus marinus NATL1A [fasta] Pro LLI PEIII marine high b/a - - - - - - - 1 - - - - - - 1 - - - - - - - - - - 1 1 - - - 1 - - - - 1 - - - - - - - - -
Cyanobacteria Chroococcales Prochlorococcus marinus NATL2A [fasta] Pro LLI PEIII marine high b/a - - - - - - - 1 - - - - - - 1 - - - - - - - - - - 1 1 - - - 1 - - - - 1 - - - - - - - - -
Cyanobacteria Chroococcales Prochlorococcus marinus SS120 [fasta] (CCMP1375) Pro LLII PEIII marine high b/a - - - - - - - 1 - - - - - - 1 - - - - - - - - - - 1 1 - - - 1 - - - - 1 - - - - - - - - -
Cyanobacteria Chroococcales Prochlorococcus marinus MIT9211 [fasta] Pro LLIII PEIII marine High b/a - - - - - - - 1 - - - - - - 1 - - - - - - - - - - 1 1 - - - 1 - - - - 1 - - - - - - - - -
Cyanobacteria Chroococcales Prochlorococcus marinus UH18301 [fasta] Pro HLII beta-PEIII marine low b/a - - - - - - - - 1 - - - - - - - - - - - - - - - - - - - - - - - - - - 1 - - - - - - - - -
Cyanobacteria Chroococcales Prochlorococcus sp. MIT9303 [fasta] Pro LLIV PEIII marine high b/a