CyanoLyase

Chromophorylation of apoproteins in each strain

This table lists the position of the cysteinyl binding sites (a consensus numbering is used for allophycocyanin, phycocyanin and phycoerythrin I; see Sidler, 1994) and chromophorylation for the different phycobiliproteins (present in the strains listed in the genome page or only the marine Synechococcus/Cyanobium/Prochlorococcus). The identity of chromophores at any given position was either determined biochemically (Ong and Glazer 1991, Shukla et al. in revision) or predicted by us, based on the presence of a specific set of phycobilin lyases in the genome and, in some cases, similar spectral characteristics of isolated phycobiliproteins as biochemically characterized ones (Six et al. 2007).

Abbreviations: PCB, phycocyanobilin; PEB, phycoerythrobilin; PUB, phycourobilin; PVB, phycoviolobilin; BL, blue light; GL, green light; PBP, phycobiliproteins

Biochemically determined pigmentations are indicated in bold. Other pigmentations are predictions.

Phycobiliprotein Allophycocyanin Phycocyanin Phycoerythrocyanin Phycoerythrin I Phycoerythrin II Phycoerythrin III
Apoprotein name ApcA ApcB ApcD ApcF CpcA/RpcA CpcB/RpcB CpcB/RpcB PecA PecB PecB CpeA CpeA CpeB CpeB CpeB MpeA MpeA MpeA MpeB MpeB MpeB PpeA PpeB PpeB PpeB
Consensus binding site α-82 β-82 αB-82 β18-82 α-84 β-84 β-155 α-84 β-84 β-155 α-84 a-143 β-50/61 β-84 β-155 α-75 α-83 α-140 β-50/61 β-82 β-159 α-73 β-61 β-82 β-163
Species Strain PBP in rods

Synechococcus sp.

CC9311

PC+PEI+PEII

PCB

PCB

PCB

PCB

PEB

PCB

PEB

PEB

PEB in GL

PUB in BL

PEB or PUB?

PEB

PEB

PUB

PEB in GL

PUB in BL

PEB in GL

PUB in BL

PUB

PEB

PEB

Synechococcus sp.

CC9605

PC+PEI+PEII

PCB

PCB

PCB

PCB

PUB

PCB

PEB

PEB

PUB

PUB

PEB

PEB

PUB

PUB

PUB

PUB

PEB

PEB

Synechococcus sp.

WH8109

PC+PEI+PEII

PCB

PCB

PCB

PCB

PEB

PCB

PCB

PEB

PEB

PEB or PUB?

PEB

PEB

PEB or PUB?

PEB

PEB

PEB or PUB?

PEB

PEB

Synechococcus sp.

WH8102

PC+PEI+PEII

PCB

PCB

PCB

PCB

PUB

PCB

PEB

PEB

PUB

PUB

PEB

PEB

PUB

PUB

PUB

PUB

PEB

PEB

Synechococcus sp.

CC9902

PC+PEI+PEII

PCB

PCB

PCB

PCB

PEB

PCB

PEB

PEB

PEB in GL

PUB in BL

PEB or PUB?

PEB

PEB

PUB

PEB in GL

PUB in BL

PEB in GL

PUB in BL

PUB

PEB

PEB

Synechococcus sp.

BL107

PC+PEI+PEII

PCB

PCB

PCB

PCB

PUB

PCB

PEB

PEB

PEB in GL

PUB in BL

PEB or PUB?

PEB

PEB

PUB

PEB in GL

PUB in BL

PEB in GL

PUB in BL

PUB

PEB

PEB

Synechococcus sp.

WH7803

PC+PEI+PEII

PCB

PCB

PCB

PCB

PEB

PCB

PEB

PEB

PEB

PEB

PEB

PEB

PEB or PUB?

PEB

PEB

PEB or PUB?

PEB

PEB

Synechococcus sp.

WH7805

PC+PEI

PCB

PCB

PCB

PCB

PEB

PCB

PCB

PEB

PEB

PEB

PEB

PEB

Synechococcus sp.

RS9917

PC

PCB

PCB

PCB

PCB

PCB

PCB

PCB

Synechococcus sp.

RS9916

PC+PEI+PEII

PCB

PCB

PCB

PCB

PUB

PCB

PEB or PCB?

PEB

PEB in GL

PUB in BL

PUB

PEB

PEB

PUB

PEB in GL

PUB in BL

PEB in GL

PUB in BL

PUB

PEB

PEB

Synechococcus sp.

WH5701

PC

PCB

PCB

PCB

PCB

PCB

PCB

PCB

Synechococcus sp.

RCC307

PC+PEI+PEII

PCB

PCB

PCB

PCB

PEB

PCB

PCB

PEB

PEB in GL

PUB in BL

PEB or PUB?

PEB

PEB

PUB

PEB

PEB in GL

PUB in BL

PUB

PEB

PEB

Synechococcus sp.

CB0101

PC

PCB

PCB

PCB

PCB

PCB

PCB

PCB

Synechococcus sp.

CB0205

PC+PEI

PCB

PCB

PCB

PCB

PEB or PCB?

PCB

PCB

PEB

PEB

PEB

PEB

PEB

Synechococcus sp.

PCC7335

PC+PEI

PCB

PCB

PCB

PCB

PCB

PCB

PCB

PEB

PEB

PEB

PEB

PEB

Synechococcus sp.

PCC7002

PC

PCB

PCB

PCB

PCB

PCB

PCB

PCB

Cyanobium sp.

PCC7001

PC

PCB

PCB

PCB

PCB

PCB

PCB

PCB

Synechococcus sp.

WH8016

PC+PEI+PEII

PCB

PCB

PCB

PCB

PEB

PCB

PEB

PEB

PEB

PEB

PEB

PEB

PEB or PUB?

PEB

PEB

PEB or PUB?

PEB

PEB

Prochlorococcus marinus

MED4

beta-PEIII

PEB

Prochlorococcus marinus

MIT9515

beta-PEIII

PEB

Prochlorococcus marinus

MIT9301

beta-PEIII

PEB

Prochlorococcus marinus

AS9601

beta-PEIII

PEB

Prochlorococcus marinus

MIT9215

beta-PEIII

PEB

Prochlorococcus marinus

MIT9312

beta-PEIII

PEB

Prochlorococcus marinus

MIT9202

beta-PEIII

PEB

Prochlorococcus marinus

NATL1A

PEIII

PEB or PUB?

PEB or PUB?

PEB

PEB

Prochlorococcus marinus

NATL2A

PEIII

PEB or PUB?

PEB or PUB?

PEB

PEB

Prochlorococcus marinus

SS120

PEIII

PEB or PUB?

PEB or PUB?

PEB

PEB

Prochlorococcus marinus

MIT9211

PEIII

PEB or PUB?

PEB or PUB?

PEB

PEB

Prochlorococcus marinus

UH18301

beta-PEIII

PEB

Prochlorococcus sp.

MIT9303

PEIII

PEB or PUB?

PEB or PUB?

PEB

PEB

Prochlorococcus sp.

MIT9313

PEIII

PEB or PUB?

PEB or PUB?

PEB

PEB

Synechocystis sp.

PCC6803

PC

PCB

PCB

PCB

PCB

PCB

PCB

PCB

Acaryochloris marina

MBIC11017

PC

PCB

PCB

PCB

PCB

PCB

PCB

PCB

Anabaena (Nostoc) sp.

PCC7120

PC+PEC

PCB

PCB

PCB

PCB

PCB

PCB

PCB

PVB

PCB

PCB

Anabaena variabilis

ATCC29413

PC+PEC

PCB

PCB

PCB

PCB

PCB

PCB

PCB

PVB

PCB

PCB

Anabaena (Nostoc) azollae

0708

PC+PEC

PCB

PCB

PCB

PCB

PCB

PCB

PCB

PVB

PCB

PCB

Arthrospira (Spirulina) maxima

CS-328

PC

PCB

PCB

PCB

PCB

PCB

PCB

PCB

Crocosphaera watsonii

WH8501

PC+PEI

PCB

PCB

PCB

PCB

PUB

PCB

PCB

PUB

PUB

PUB

PEB

PUB

Cyanothece sp.

ATCC51142

PC

PCB

PCB

PCB

PCB

PCB

PCB

PCB

Cyanothece sp.

PCC7424

PC+PEI

PCB

PCB

PCB

PCB

PCB

PCB

PCB

PEB

PEB

PEB

PCB

PEB

Cyanothece sp.

PCC7425

PC

PCB

PCB

PCB

PCB

PCB

PCB

PCB

Cyanothece sp.

PCC8801

PC+PEI

PCB

PCB

PCB

PCB

PCB

PCB

PCB

PEB

PEB

PEB

PEB

PEB

Cyanothece sp.

PCC8802

PC

PCB

PCB

PCB

PCB

PCB

PCB

PCB

Cyanothece sp.

CCY0110

PC

PCB

PCB

PCB

PCB

PCB

PCB

PCB

Cyanothece sp.

PCC7822

PC+PEI

PCB

PCB

PCB

PCB

PCB

PCB

PCB

PEB

PEB

PEB

PEB

PEB

Fremyella diplosiphon (Tolypothrix sp. / Calothrix sp.)

Fd33

PC+PEI

PCB

PCB

PCB

PCB

PCB

PCB

PCB

PEB

PEB

PEB

PEB

PEB

Fischerella sp. (Mastigocladus laminosus)

JSC-11

PC+PEC

PCB

PCB

PCB

PCB

PCB

PCB

PCB

PVB

PCB

PCB

Gloeobacter violaceus

PCC7421

PC+PEI

PCB

PCB

PCB

PCB

PCB

PCB

PCB

PEB

PEB

PEB

PEB

PEB

Gloeothece sp.

PCC6909/1

PC+PEI

PCB

PCB

PCB

PCB

PCB

PCB

PCB

PEB

PEB

PEB

PEB

PEB

Lyngbya aestuarii

CCY9616

PC

PCB

PCB

PCB

PCB

PCB

PCB

PCB

Microcoleus chthonoplastes

PCC7420

PC+PEC

PCB

PCB

PCB

PCB

PCB

PCB

PCB

PVB

PCB

PCB

Microcystis aeruginosa

NIES-843

PC

PCB

PCB

PCB

PCB

PCB

PCB

PCB

Nodularia spumigena

CCY9414

PC

PCB

PCB

PCB

PCB

PCB

PCB

PCB

Nostoc punctiforme

ATCC29133

PC+PEI

PCB

PCB

PCB

PCB

PCB

PCB

PCB

PEB

PEB

PEB

PEB

PEB

Synechococcus elongatus

PCC7942

PC

PCB

PCB

PCB

PCB

PCB

PCB

PCB

Synechococcus elongatus

PCC6301

PC

PCB

PCB

PCB

PCB

PCB

PCB

PCB

Synechococcus sp.

JA-2-3B'a(2-13)

PC

PCB

PCB

PCB

PCB

PCB

PCB

PCB

Synechococcus sp.

JA-3-3Ab

PC

PCB

PCB

PCB

PCB

PCB

PCB

PCB

Thermosynechococcus elongatus

BP-1

PC

PCB

PCB

PCB

PCB

PCB

PCB

PCB

Trichodesmium erythraeum

IMS101

PC+PEI

PCB

PCB

PCB

PCB

PCB

PCB

PCB

PEB

PEB

PEB

PEB

PEB

Cyanidioschyzon merolae

10D

PC

PCB

PCB

PCB

PCB

PCB

PCB

PCB

Guillardia theta

CCMP2712

Cr-PE 545

PEB

PEB

PEB

Microcystis aeruginosa

PCC7806

PC

PCB

PCB

PCB

PCB

PCB

PCB

PCB

Arthrospira (Spirulina) platensis

NIES-39

PC

PCB

PCB

PCB

PCB

PCB

PCB

PCB

Microcoleus vaginatus

FGP-2

PC

PCB

PCB

PCB

PCB

PCB

PCB

PCB

Lyngbya majuscula

3L

PC+PEI

PCB

PCB

PCB

PCB

PCB

PCB

PCB

PEB

PEB

PEB

PEB

PEB

Oscillatoria sp.

PCC6506

PC

PCB

PCB

PCB

PCB

PCB

PCB

PCB

Cylindrospermopsis raciborskii

CS-505

PC

PCB

PCB

PCB

PCB

PCB

PCB

PCB

Raphidiopsis brookii

D9

PC

PCB

PCB

PCB

PCB

PCB

PCB

PCB

Paulinella chromatophora

M0880

PC

PCB

PCB

PCB

PCB

PCB

PCB

PCB

Cyanothece sp.

ATCC51472

PC

PCB

PCB

PCB

PCB

PCB

PCB

PCB

Acaryochloris sp.

CCMEE5410

APC only

PCB

PCB

PCB

PCB

Arthrospira (Spirulina) platensis

Paraca

PC

PCB

PCB

PCB

PCB

PCB

PCB

PCB

Hemiselmis andersenii

CCMP644

Cr-PE 555

Crocosphaera watsonii

WH0003

PC+PEI

PCB

PCB

PCB

PCB

PCB

PCB

PCB

Microcystis aeruginosa

PCC9701

PC

PCB

PCB

PCB

PCB

PCB

PCB

PCB

Microcystis aeruginosa

PCC9808

PC

PCB

PCB

PCB

PCB

PCB

PCB

PCB

Microcystis aeruginosa

PCC7941

PC

PCB

PCB

PCB

PCB

PCB

PCB

PCB

Microcystis aeruginosa

PCC9443

PC

PCB

PCB

PCB

PCB

PCB

PCB

PCB

Microcystis aeruginosa

PCC9717

PC

PCB

PCB

PCB

PCB

PCB

PCB

PCB

Microcystis aeruginosa

PCC9432

PC

PCB

PCB

PCB

PCB

PCB

PCB

PCB

Microcystis sp.

T1-4

PC+PEI

PCB

PCB

PCB

PCB

PCB

PCB

PCB

PEB

PEB

PEB

PEB

PEB

Synechococcus sp.

WH8020

PC+PEI+PEII

PCB

PCB

PCB

PCB

PEB

PCB

PEB

PEB

PEB in GL

PUB in BL

PEB

PEB

PEB

PUB

PEB in GL

PUB in BL

PEB in GL

PUB in BL

PUB

PEB

PEB

Oscillatoria nigro-viridis

PCC7112

PC+PEI

Scytonema hofmanni

PCC7110

PC+PEC

Fischerella muscicola

PCC73103

PC+PEC

Fischerella muscicola

PCC7414

PC+PEC

Fischerella thermalis

PCC7521

PC+PEC

Chlorogloeopsis sp.

PCC9212

PC+PEC

Chlorogloeopsis fritschii

PCC6912

PC+PEC

Calothrix sp.

PCC6303

PC+PEI

Calothrix sp.

PCC7507

PC+PEC

Oscillatoria sp.

PCC10802

PC+PEI

Oscillatoria acuminata

PCC6304

PC

Fischerella sp.

PCC9605

PC+PEC

Fischerella sp.

PCC9431

PC+PEC

Fischerella sp.

PCC9339

PC+PEC

Nostoc sp.

PCC7524

PC+PEC

Nostoc sp.

PCC7107

PC+PEC

Cylindrospermum stagnale

PCC7417

PC+PEC

Anabaena cylindrica

PCC7122

PC+PEC

Anabaena sp.

PCC7108

PC+PEC

Rivularia sp.

PCC7116

PC+PEC

Synechocystis sp.

PCC7509

PC

Gloeocapsa sp.

PCC7428

PC

Chroococcidiopsis thermalis

PCC7203

PC+PEC

Dactylococcopsis salina

PCC8305

Halothece sp.

PCC7418

PC

Pleurocapsa sp.

PCC7327

PC+PEI

Gloeocapsa sp.

PCC73106

PC+PEI

Leptolyngbya sp.

PCC7376

PC+PEI

Cyanobacterium stanieri

PCC7202

PC

Cyanobacterium aponimum

PCC10605

Stanieria cyanosphaera

PCC7437

PC+PEI

Xenococcus sp.

PCC7305

PC+PEI

Microcoleus sp.

PCC7113

PC+PEI

Crinalium epipsammum

PCC9333

PC

Chamaesiphon minutus

PCC6605

PC+PEI

Cyanobium gracile

PCC6307

PC

Leptolyngbya sp.

PCC6406

PC+PEC

Leptolyngbya sp.

PCC7375

PC+PEI

Geitlerinema sp.

PCC7407

PC

Leptolyngbya boryana

PCC6306

PC

Synechococcus sp.

PCC6312

PC

Synechococcus sp.

PCC7502

PC

Pseudanabaena sp. (biceps)

PCC7429

PC

Pseudanabaena sp.

PCC7367

PC+PEI

Microcystis aeruginosa

TAIHU98

PC

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