CyanoLyase

RCC307 strain

[fasta] [gff] [only sure] [only unsure]

Lineage

Prokarya

Cyanobacteria

Chroococcales

Synechococcus

sp.

Strain information

Subcluster: 5.3

Clade/Ecotype: 5.3-I

Phycobiliprotein types: PC+PEI+PEII

Pigment type: 3eA

Habitat: marine

Genome sequence

Refseq record: NC_009482

Genome status: complete

Sequencing center: Genoscope

References

Dufresne et al., 2008. Unraveling the genomic mosaic of a ubiquitous genus of marine cyanobacteria Genome Biol, 9, R90.
Humily et al., 2013. A gene island with two possible configurations is involved in chromatic acclimation in marine Synechococcus PLoS One, 8, e84459.

Gene	Locus tag	Genbank	Remark	Length	Last change
CpcS-II subfamily	SynRCC307_2024	YP_001228280.1		196	09-26-2011
CpcT family	SynRCC307_2033	YP_001228289.1	No rpcT	201	09-26-2011
CpeT family	SynRCC307_2042	YP_001228298.1		208	09-26-2011
CpeS-II subfamily	SynRCC307_2041	YP_001228297.1		177	09-26-2011
CpeU-II subfamily	SynRCC307_2060	YP_001228316.1		202	11-25-2011
CpeY family	SynRCC307_2053	YP_001228309.1		441	09-26-2011
CpeZ family	SynRCC307_2052	YP_001228308.1		205	09-26-2011
MpeU family	SynRCC307_2051	YP_001228307.1		298	10-25-2011
MpeV family	SynRCC307_2056	YP_001228312.1		304	04-20-2023
MpeY family	SynRCC307_2047	YP_001228303.1		398	09-26-2011
MpeZ family	SynRCC307_2004	YP_001228260.1		414	09-26-2011
IaiH family	SynRCC307_1951	YP_001228207.1		258	10-26-2011
CotB homologs 1 family	SynRCC307_0128	YP_001226384.1		177	12-05-2011
CpcE/RpcE family	SynRCC307_2066	YP_001228322.1	Unclear whether this strain has CpcE/F or RpcE/F	274	12-06-2011
CpcF/RpcF family	SynRCC307_2067	YP_001228323.1	Unclear whether this strain has CpcE/F or RpcE/F	218	12-06-2011
CpcU-II subfamily	SynRCC307_1726	YP_001227982.1		151	11-04-2011

Model strains, Marine strains

Last update: 19 Jan 2018 15:16:23

Station biologique de Roscoff

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