CpeS family
[fasta] [only sure] [only unsure]
Description
Two members of this family were characterized biochemically : the "CpeS Pro HL" of Prochlorococcus marinus MED4 (Wiethaus et al 2010) and the CpeS-I of Fremyella diplosiphon Fd33/UTEX481/PCC7601 (Biswas et al., 2011).
Motif
A motif characterising this family is available.
References
- Biswas et al., 2011. Characterization of the activities of the CpeY, CpeZ, and CpeS bilin lyases in phycoerythrin biosynthesis in Fremyella diplosiphon strain UTEX 481 J Biol Chem, 286(41), 35509-21.
- Wiethaus et al., 2010. CpeS is a lyase specific for attachment of 3Z-PEB to Cys82 of {beta}-phycoerythrin from Prochlorococcus marinus MED4 J Biol Chem, 285, 37561-37569.
| Gene | Locus tag | Genbank | Species | Strain | PBP in rods | Pigment type | Remark | Length | Last change |
|---|---|---|---|---|---|---|---|---|---|
| CpeS-I subfamily | S7335_2433 | ZP_05036001.1 | Synechococcus sp. | PCC7335 | PC+PEI | CA3 | 176 | 09-26-2011 | |
| CpeS-I subfamily | CwatDRAFT_5719 | ZP_00514726.1 | Crocosphaera watsonii | WH8501 | PC+PEI | 179 | 09-26-2011 | ||
| CpeS-I subfamily | PCC7424_5723 | YP_002381018.1 | Cyanothece sp. | PCC7424 | PC+PEI | 2 | 177 | 09-26-2011 | |
| CpeS-I subfamily | PCC8801_4527 | YP_002364804.1 | Cyanothece sp. | PCC8801 | PC+PEI | 2 | 179 | 09-26-2011 | |
| CpeS-I subfamily | Cyan7822_4033 | YP_003889233.1 | Cyanothece sp. | PCC7822 | PC+PEI | 2 | 177 | 09-26-2011 | |
| CpeS-I subfamily | gi|145967347|gb|ABP99029.1| | ABP99029.1 | Fremyella diplosiphon (Tolypothrix sp. / Calothrix sp.) | Fd33 (UTEX481/PCC7601) | PC+PEI | CA3 | N-term shortened (6 aa removed: METKVL). C-term much longer than in other CpeS-I sequences and also includes a specific sequence at between aa 103-112. | 215 | 09-17-2012 |
| CpeS-I subfamily | GL6909_3548 | Gloeothece sp. | PCC6909/1 | PC+PEI | 2 | 179 | 05-31-2011 | ||
| CpeS-I subfamily | Npun_F0737 | YP_001864432.1 | Nostoc punctiforme | ATCC29133 (PCC73102) | PC+PEI | 2 | 178 | 09-26-2011 | |
| CpeS-I subfamily | Tery_4106 | YP_723587.1 | Trichodesmium erythraeum | IMS101 | PC+PEI | 173 | 09-26-2011 | ||
| CpeS-I subfamily | gvip162 | NP_924138.1 | Gloeobacter violaceus | PCC7421 | PC+PEI | 2 | 180 | 11-24-2011 | |
| CpeS-I subfamily | OSCI_1700002 | ZP_07110201.1 | Oscillatoria sp. | PCC6506 (PCC9029/ATCC29081 /UTEX 1547) | PC | 1 | N-term shortened (2 aa removed: MP) | 177 | 09-16-2012 |
| CpeS-I subfamily | LYNGBM3L_16710 | ZP_08428242.1 | Lyngbya majuscula | 3L | PC+PEI | 2 | 178 | 10-19-2011 | |
| CpeS-I subfamily | CWATWH0003_1105 | EHJ14216.1 | Crocosphaera watsonii | WH0003 | PC+PEI | 179 | 02-22-2012 | ||
| CpeS-I subfamily | MICAI_380005 | ZP_10229442.1 | Microcystis sp. | T1-4 | PC+PEI | 2 | 177 | 08-22-2012 | |
| CpeS-I subfamily | Osc7112_1030 | YP_007114004.1 | Oscillatoria nigro-viridis | PCC7112 | PC+PEI | 2 | 181 | 04-24-2013 | |
| CpeS-I subfamily | Ple7327_0106 | YP_007079149.1 | Pleurocapsa sp. | PCC7327 | PC+PEI | 178 | 04-24-2013 | ||
| CpeS-I subfamily | Mic7113_4756 | YP_007123835.1 | Microcoleus sp. | PCC7113 | PC+PEI | 2 | 175 | 04-24-2013 | |
| CpeS-I subfamily | Pse7367_3898 | YP_007083553.1 | Pseudanabaena sp. | PCC7367 | PC+PEI | 183 | 04-24-2013 | ||
| CpeS-I subfamily | GLO73106DRAFT_00012580 | ZP_21051594.1 | Gloeocapsa sp. | PCC73106 | PC+PEI | 176 | 04-24-2013 | ||
| CpeS-I subfamily | Xen7305DRAFT_00019040 | ZP_21056252.1 | Xenococcus sp. | PCC7305 | PC+PEI | 181 | 04-24-2013 | ||
| CpeS-I subfamily | Lepto7376_0477 | YP_007069743.1 | Leptolyngbya sp. | PCC7376 | PC+PEI | 177 | 04-24-2013 | ||
| CpeS-I subfamily | ZP_18907660 | ZP_18907660.1 | Leptolyngbya sp. | PCC7375 | PC+PEI | 2 | 175 | 04-24-2013 | |
| CpeS-I subfamily | Cal6303_1334 | YP_007136366.1 | Calothrix sp. | PCC6303 | PC+PEI | 2 | 180 | 04-29-2013 | |
| CpeS-I subfamily | Sta7437_0960 | YP_007131508.1 | Stanieria cyanosphaera | PCC7437 | PC+PEI | 179 | 04-29-2013 | ||
| CpeS-I subfamily | Cha6605_4067 | YP_007098550.1 | Chamaesiphon minutus | PCC6605 | PC+PEI | 178 | 04-29-2013 | ||
| CpeS-I subfamily | Osc10802DRAFT_5368 | Oscillatoria sp. | PCC10802 | PC+PEI | 194 | 06-12-2013 | |||
| CpeS-I subfamily | Pse7429DRAFT_1237 | ZP_21065324.1 | Pseudanabaena sp. (biceps) | PCC7429 | PC | 180 | 06-20-2013 | ||
| CpeS-II subfamily | sync_0510 | YP_729737.1 | Synechococcus sp. | CC9311 | PC+PEI+PEII | 3dA/CA4-A | 179 | 09-26-2011 | |
| CpeS-II subfamily | Syncc9605_0441 | YP_380772.1 | Synechococcus sp. | CC9605 | PC+PEI+PEII | 3c | 180 | 09-26-2011 | |
| CpeS-II subfamily | SH8109_0064 | ZP_05789382.1 | Synechococcus sp. | WH8109 | PC+PEI+PEII | 3bB | 180 | 09-26-2011 | |
| CpeS-II subfamily | SYNW2002 | NP_898093.1 | Synechococcus sp. | WH8102 | PC+PEI+PEII | 3c | 180 | 09-26-2011 | |
| CpeS-II subfamily | Syncc9902_1886 | YP_377887.1 | Synechococcus sp. | CC9902 | PC+PEI+PEII | 3dA/CA4-A | 178 | 09-26-2011 | |
| CpeS-II subfamily | BL107_08991 | ZP_01469901.1 | Synechococcus sp. | BL107 | PC+PEI+PEII | 3dA/CA4-A | 178 | 09-26-2011 | |
| CpeS-II subfamily | SynWH7803_0499 | YP_001224222.1 | Synechococcus sp. | WH7803 | PC+PEI+PEII | 3a | 178 | 09-26-2011 | |
| CpeS-II subfamily | WH7805_06671 | ZP_01123334.1 | Synechococcus sp. | WH7805 | PC+PEI | 2 | 178 | 09-26-2011 | |
| CpeS-II subfamily | RS9916_40271 | ZP_01473097.1 | Synechococcus sp. | RS9916 | PC+PEI+PEII | 3dA/CA4-A | 178 | 09-26-2011 | |
| CpeS-II subfamily | SynRCC307_2041 | YP_001228297.1 | Synechococcus sp. | RCC307 | PC+PEI+PEII | 3eA | 177 | 09-26-2011 | |
| CpeS-II subfamily | SCB02_010100004283 | ZP_07970126.1 | Synechococcus sp. | CB0205 | PC+PEI | 2 | 177 | 11-04-2011 | |
| CpeS-II subfamily | Syn8016DRAFT_2761 | ZP_08957414.1 | Synechococcus sp. | WH8016 | PC+PEI+PEII | 3aA | 179 | 11-04-2011 | |
| CpeS-II subfamily | NATL1_03911 | YP_001014220.1 | Prochlorococcus marinus | NATL1A | PEIII | high b/a | N-term extended (16 aa added) | 177 | 08-28-2012 |
| CpeS-II subfamily | PMN2A_1677 | YP_292868.1 | Prochlorococcus marinus | NATL2A | PEIII | high b/a | 177 | 11-25-2011 | |
| CpeS-II subfamily | Pro0343 | NP_874737.1 | Prochlorococcus marinus | SS120 (CCMP1375) | PEIII | high b/a | 181 | 11-25-2011 | |
| CpeS-II subfamily | P9211_03381 | YP_001550223.1 | Prochlorococcus marinus | MIT9211 | PEIII | High b/a | 178 | 11-25-2011 | |
| CpeS-II subfamily | P9303_22301 | YP_001018230.1 | Prochlorococcus sp. | MIT9303 | PEIII | high b/a | N-term extended: MNIEQFVDQSEGTWRS added by FP | 177 | 09-26-2011 |
| CpeS-II subfamily | PMT1677 | NP_895504.1 | Prochlorococcus sp. | MIT9313 | PEIII | high b/a | 177 | 09-26-2011 | |
| CpeS-II subfamily | SynWH8020_CpeSII | Synechococcus sp. | WH8020 | PC+PEI+PEII | 3dA/CA4-A | From unpublished WH8020 genome | 179 | 08-27-2012 | |
| CpeS-ProHL subfamily | PMM0306 | NP_892425.1 | Prochlorococcus marinus | MED4 (CCMP1986/CCMP1378) | beta-PEIII | low b/a | 183 | 09-26-2011 | |
| CpeS-ProHL subfamily | P9515_03401 | YP_001010656.1 | Prochlorococcus marinus | MIT9515 | beta-PEIII | low b/a | 183 | 09-26-2011 | |
| CpeS-ProHL subfamily | P9301_03311 | YP_001090555.1 | Prochlorococcus marinus | MIT9301 | beta-PEIII | low b/a | 182 | 09-26-2011 | |
| CpeS-ProHL subfamily | A9601_03301 | YP_001008725.1 | Prochlorococcus marinus | AS9601 | beta-PEIII | low b/a | 183 | 09-26-2011 | |
| CpeS-ProHL subfamily | P9215_03311 | YP_001483534.1 | Prochlorococcus marinus | MIT9215 | beta-PEIII | low b/a | 183 | 09-26-2011 | |
| CpeS-ProHL subfamily | PMT9312_0308 | YP_396805.1 | Prochlorococcus marinus | MIT9312 | beta-PEIII | low b/a | 183 | 09-26-2011 | |
| CpeS-ProHL subfamily | PUH18301_0334 | Prochlorococcus marinus | UH18301 | beta-PEIII | low b/a | 183 | 05-31-2011 | ||
| CpeS-ProHL subfamily | P9202_xx | Prochlorococcus marinus | MIT9202 | beta-PEIII | low b/a | Not in Refseq, found with tblastn in JCVI sequence | 183 | 02-21-2012 |
Model strains, Marine strains
Last update: 17 Sep 2012 7:18:28
