CpeS-I subfamily

Description

The CpeS-I from Fremyella diplosiphon strain UTEX481 was characterized as a PEB:Cys-80 beta-PE lyase (Biswas et al., 2011). This subfamily contains all PE-containing cyanobacteria outside the marine Synechococcus/Prochlorococcus branch

Motif

A motif characterising this family is available.

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Phylogeny

Multiple alignment

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References

Biswas et al., 2011. Characterization of the activities of the CpeY, CpeZ, and CpeS bilin lyases in phycoerythrin biosynthesis in Fremyella diplosiphon strain UTEX 481 J Biol Chem, 286(41), 35509-21.

Gene	Locus tag	Genbank	Species	Strain	PBP in rods	Pigment type	Remark	Length	Last change
CpeS-I subfamily	S7335_2433	ZP_05036001.1	Synechococcus sp.	PCC7335	PC+PEI	CA3		176	09-26-2011
CpeS-I subfamily	CwatDRAFT_5719	ZP_00514726.1	Crocosphaera watsonii	WH8501	PC+PEI			179	09-26-2011
CpeS-I subfamily	PCC7424_5723	YP_002381018.1	Cyanothece sp.	PCC7424	PC+PEI	2		177	09-26-2011
CpeS-I subfamily	PCC8801_4527	YP_002364804.1	Cyanothece sp.	PCC8801	PC+PEI	2		179	09-26-2011
CpeS-I subfamily	Cyan7822_4033	YP_003889233.1	Cyanothece sp.	PCC7822	PC+PEI	2		177	09-26-2011
CpeS-I subfamily	gi\|145967347\|gb\|ABP99029.1\|	ABP99029.1	Fremyella diplosiphon (Tolypothrix sp. / Calothrix sp.)	Fd33 (UTEX481/PCC7601)	PC+PEI	CA3	N-term shortened (6 aa removed: METKVL). C-term much longer than in other CpeS-I sequences and also includes a specific sequence at between aa 103-112.	215	09-17-2012
CpeS-I subfamily	gvip162	NP_924138.1	Gloeobacter violaceus	PCC7421	PC+PEI	2		180	11-24-2011
CpeS-I subfamily	GL6909_3548		Gloeothece sp.	PCC6909/1	PC+PEI	2		179	05-31-2011
CpeS-I subfamily	Npun_F0737	YP_001864432.1	Nostoc punctiforme	ATCC29133 (PCC73102)	PC+PEI	2		178	09-26-2011
CpeS-I subfamily	Tery_4106	YP_723587.1	Trichodesmium erythraeum	IMS101	PC+PEI			173	09-26-2011
CpeS-I subfamily	OSCI_1700002	ZP_07110201.1	Oscillatoria sp.	PCC6506 (PCC9029/ATCC29081 /UTEX 1547)	PC	1	N-term shortened (2 aa removed: MP)	177	09-16-2012
CpeS-I subfamily	LYNGBM3L_16710	ZP_08428242.1	Lyngbya majuscula	3L	PC+PEI	2		178	10-19-2011
CpeS-I subfamily	CWATWH0003_1105	EHJ14216.1	Crocosphaera watsonii	WH0003	PC+PEI			179	02-22-2012
CpeS-I subfamily	MICAI_380005	ZP_10229442.1	Microcystis sp.	T1-4	PC+PEI	2		177	08-22-2012
CpeS-I subfamily	Osc7112_1030	YP_007114004.1	Oscillatoria nigro-viridis	PCC7112	PC+PEI	2		181	04-24-2013
CpeS-I subfamily	Ple7327_0106	YP_007079149.1	Pleurocapsa sp.	PCC7327	PC+PEI			178	04-24-2013
CpeS-I subfamily	Mic7113_4756	YP_007123835.1	Microcoleus sp.	PCC7113	PC+PEI	2		175	04-24-2013
CpeS-I subfamily	Pse7367_3898	YP_007083553.1	Pseudanabaena sp.	PCC7367	PC+PEI			183	04-24-2013
CpeS-I subfamily	GLO73106DRAFT_00012580	ZP_21051594.1	Gloeocapsa sp.	PCC73106	PC+PEI			176	04-24-2013
CpeS-I subfamily	Xen7305DRAFT_00019040	ZP_21056252.1	Xenococcus sp.	PCC7305	PC+PEI			181	04-24-2013
CpeS-I subfamily	Lepto7376_0477	YP_007069743.1	Leptolyngbya sp.	PCC7376	PC+PEI			177	04-24-2013
CpeS-I subfamily	ZP_18907660	ZP_18907660.1	Leptolyngbya sp.	PCC7375	PC+PEI	2		175	04-24-2013
CpeS-I subfamily	Cal6303_1334	YP_007136366.1	Calothrix sp.	PCC6303	PC+PEI	2		180	04-29-2013
CpeS-I subfamily	Sta7437_0960	YP_007131508.1	Stanieria cyanosphaera	PCC7437	PC+PEI			179	04-29-2013
CpeS-I subfamily	Cha6605_4067	YP_007098550.1	Chamaesiphon minutus	PCC6605	PC+PEI			178	04-29-2013
CpeS-I subfamily	Osc10802DRAFT_5368		Oscillatoria sp.	PCC10802	PC+PEI			194	06-12-2013
CpeS-I subfamily	Pse7429DRAFT_1237	ZP_21065324.1	Pseudanabaena sp. (biceps)	PCC7429	PC			180	06-20-2013

Model strains, Marine strains

Last update: 06 Nov 2012 12:03:34