CpeS-ProHL subfamily
[fasta] [only sure] [only unsure]
Description
This subfamily contains only the sequences of Prochlorococcus marinus HL ecotypes. CpeS sequence is the sole phycobilin lyase present in these genomes and was biochemically characterized in strain MED4 as a PEB:Cys-82 beta-PEIII (PpeB) lyase (Wiethaus et al., 2010a). PpeB is also the sole PBP present in this (and other Prochlorococcus HL) strain.
Motif
A motif characterising this family is available.
References
- Tu et al., 2009. Toward a mechanism for biliprotein lyases: revisiting nucleophilic addition to phycocyanobilin J Am Chem Soc, 131, 5399-5401.
- Wiethaus et al., 2010. CpeS is a lyase specific for attachment of 3Z-PEB to Cys82 of {beta}-phycoerythrin from Prochlorococcus marinus MED4 J Biol Chem, 285, 37561-37569.
| Gene | Locus tag | Genbank | Species | Strain | PBP in rods | Pigment type | Remark | Length | Last change |
|---|---|---|---|---|---|---|---|---|---|
| CpeS-ProHL subfamily | PMM0306 | NP_892425.1 | Prochlorococcus marinus | MED4 (CCMP1986/CCMP1378) | beta-PEIII | low b/a | 183 | 09-26-2011 | |
| CpeS-ProHL subfamily | P9515_03401 | YP_001010656.1 | Prochlorococcus marinus | MIT9515 | beta-PEIII | low b/a | 183 | 09-26-2011 | |
| CpeS-ProHL subfamily | P9301_03311 | YP_001090555.1 | Prochlorococcus marinus | MIT9301 | beta-PEIII | low b/a | 182 | 09-26-2011 | |
| CpeS-ProHL subfamily | A9601_03301 | YP_001008725.1 | Prochlorococcus marinus | AS9601 | beta-PEIII | low b/a | 183 | 09-26-2011 | |
| CpeS-ProHL subfamily | P9215_03311 | YP_001483534.1 | Prochlorococcus marinus | MIT9215 | beta-PEIII | low b/a | 183 | 09-26-2011 | |
| CpeS-ProHL subfamily | PMT9312_0308 | YP_396805.1 | Prochlorococcus marinus | MIT9312 | beta-PEIII | low b/a | 183 | 09-26-2011 | |
| CpeS-ProHL subfamily | PUH18301_0334 | Prochlorococcus marinus | UH18301 | beta-PEIII | low b/a | 183 | 05-31-2011 | ||
| CpeS-ProHL subfamily | P9202_xx | Prochlorococcus marinus | MIT9202 | beta-PEIII | low b/a | Not in Refseq, found with tblastn in JCVI sequence | 183 | 02-21-2012 |
Model strains, Marine strains
Last update: 23 Apr 2023 8:43:15
