CpeS-II subfamily
[fasta] [only sure] [only unsure]
Description
All marine picocyanobacteria possess this gene, except high-light adapted (HL) Prochlorococcus ecotypes, the derived CpeS sequence of which was classified into a different subfamily (CpeS-ProHL).
Motif
A motif characterising this family is available.
References
- Wiethaus et al., 2010. CpeS is a lyase specific for attachment of 3Z-PEB to Cys82 of {beta}-phycoerythrin from Prochlorococcus marinus MED4 J Biol Chem, 285, 37561-37569.
| Gene | Locus tag | Genbank | Species | Strain | PBP in rods | Pigment type | Remark | Length | Last change |
|---|---|---|---|---|---|---|---|---|---|
| CpeS-II subfamily | sync_0510 | YP_729737.1 | Synechococcus sp. | CC9311 | PC+PEI+PEII | 3dA/CA4-A | 179 | 09-26-2011 | |
| CpeS-II subfamily | Syncc9605_0441 | YP_380772.1 | Synechococcus sp. | CC9605 | PC+PEI+PEII | 3c | 180 | 09-26-2011 | |
| CpeS-II subfamily | SH8109_0064 | ZP_05789382.1 | Synechococcus sp. | WH8109 | PC+PEI+PEII | 3bB | 180 | 09-26-2011 | |
| CpeS-II subfamily | SYNW2002 | NP_898093.1 | Synechococcus sp. | WH8102 | PC+PEI+PEII | 3c | 180 | 09-26-2011 | |
| CpeS-II subfamily | Syncc9902_1886 | YP_377887.1 | Synechococcus sp. | CC9902 | PC+PEI+PEII | 3dA/CA4-A | 178 | 09-26-2011 | |
| CpeS-II subfamily | BL107_08991 | ZP_01469901.1 | Synechococcus sp. | BL107 | PC+PEI+PEII | 3dA/CA4-A | 178 | 09-26-2011 | |
| CpeS-II subfamily | SynWH7803_0499 | YP_001224222.1 | Synechococcus sp. | WH7803 | PC+PEI+PEII | 3a | 178 | 09-26-2011 | |
| CpeS-II subfamily | WH7805_06671 | ZP_01123334.1 | Synechococcus sp. | WH7805 | PC+PEI | 2 | 178 | 09-26-2011 | |
| CpeS-II subfamily | RS9916_40271 | ZP_01473097.1 | Synechococcus sp. | RS9916 | PC+PEI+PEII | 3dA/CA4-A | 178 | 09-26-2011 | |
| CpeS-II subfamily | SynRCC307_2041 | YP_001228297.1 | Synechococcus sp. | RCC307 | PC+PEI+PEII | 3eA | 177 | 09-26-2011 | |
| CpeS-II subfamily | SCB02_010100004283 | ZP_07970126.1 | Synechococcus sp. | CB0205 | PC+PEI | 2 | 177 | 11-04-2011 | |
| CpeS-II subfamily | Syn8016DRAFT_2761 | ZP_08957414.1 | Synechococcus sp. | WH8016 | PC+PEI+PEII | 3aA | 179 | 11-04-2011 | |
| CpeS-II subfamily | NATL1_03911 | YP_001014220.1 | Prochlorococcus marinus | NATL1A | PEIII | high b/a | N-term extended (16 aa added) | 177 | 08-28-2012 |
| CpeS-II subfamily | PMN2A_1677 | YP_292868.1 | Prochlorococcus marinus | NATL2A | PEIII | high b/a | 177 | 11-25-2011 | |
| CpeS-II subfamily | Pro0343 | NP_874737.1 | Prochlorococcus marinus | SS120 (CCMP1375) | PEIII | high b/a | 181 | 11-25-2011 | |
| CpeS-II subfamily | P9211_03381 | YP_001550223.1 | Prochlorococcus marinus | MIT9211 | PEIII | High b/a | 178 | 11-25-2011 | |
| CpeS-II subfamily | P9303_22301 | YP_001018230.1 | Prochlorococcus sp. | MIT9303 | PEIII | high b/a | N-term extended: MNIEQFVDQSEGTWRS added by FP | 177 | 09-26-2011 |
| CpeS-II subfamily | PMT1677 | NP_895504.1 | Prochlorococcus sp. | MIT9313 | PEIII | high b/a | 177 | 09-26-2011 | |
| CpeS-II subfamily | SynWH8020_CpeSII | Synechococcus sp. | WH8020 | PC+PEI+PEII | 3dA/CA4-A | From unpublished WH8020 genome | 179 | 08-27-2012 |
Model strains, Marine strains
Last update: 23 Apr 2023 8:42:24
