PCC6803 strain
Also known as: ATCC27184
[fasta] [gff] [only sure] [only unsure]
Lineage
- Prokarya
- Cyanobacteria
- Chroococcales
- Synechocystis
- sp.
Strain information
Phycobiliprotein types: PC
Pigment type: 1
Habitat: freshwater
Remark: Strain in which CpcT (Bolte et al, 2008), CpcE/F (Alvey et al, 2011) and NblB (Li & Sherman, 2002) have been characterized
Genome sequence
References
- Alvey et al., 2011. Attachment of noncognate chromophores to CpcA of Synechocystis sp. PCC 6803 and Synechococcus sp. PCC 7002 by heterologous expression in Escherichia coli Biochemistry, 50, 4890-4902.
- Bolte et al., 2008. Complementation of a phycocyanin-bilin lyase from Synechocystis sp. PCC 6803 with a nucleomorph-encoded open reading frame from the cryptophyte Guillardia theta BMC Plant Biol, 8, 56.
- Kaneko et al., 1996. Sequence analysis of the genome of the unicellular cyanobacterium Synechocystis sp. strain PCC6803. II. Sequence determination of the entire genome and assignment of potential protein-coding regions DNA Res, 3, 109-136.
- Li et al., 2002. Characterization of Synechocystis sp. strain PCC 6803 and Delta nbl mutants under nitrogen-deficient conditions Archiv Microbiol, 178, 256-266.
| Gene | Locus tag | Genbank | Remark | Length | Last change |
|---|---|---|---|---|---|
| CpcS-I subfamily | slr2049 | NP_440437.1 | 192 | 09-26-2011 | |
| CpcT family | slr1649 | NP_441787.1 | 196 | 09-26-2011 | |
| CpcU-I subfamily | Sll0853 | NP_441116.1 | N-term shortened (11 aa removed: MKPVAPRSFFA) | 175 | 09-16-2012 |
| IaiH family | slr1098 | NP_440077.1 | 252 | 10-26-2011 | |
| CotB homologs 2 family | slr1687 | NP_441698.1 | 223 | 09-26-2011 | |
| CpcE-I subfamily | slr1878 | NP_441003.1 | 272 | 09-26-2011 | |
| CpcF-I subfamily | sll1051 | NP_439974.1 | 214 | 09-26-2011 | |
| NblB family | sll1663 | NP_440142.1 | Blastp | 220 | 09-26-2011 |
Model strains, Marine strains
Last update: 24 Aug 2012 10:54:00
