CyanoLyase

CC9311 strain

Lineage

  • Prokarya
    • Cyanobacteria
      • Chroococcales
        • Synechococcus
          • sp.

Strain information

Subcluster: 5.1

Clade/Ecotype: I

Subclade: Ia

Phycobiliprotein types: PC+PEI+PEII

Pigment type: 3d/CA4

Habitat: marine

Genome sequence

Refseq record: NC_008319

Genome status: complete

Sequencing center: JGI

References

  • Dufresne et al., 2008. Unraveling the genomic mosaic of a ubiquitous genus of marine cyanobacteria Genome Biol, 9, R90.
  • Palenik et al., 2006. Genome sequence of Synechococcus CC9311: Insights into adaptation to a coastal environment Proc Natl Acad Sci USA, 103, 13555-13559.
  • Six et al., 2007. Diversity and evolution of phycobilisomes in marine Synechococcus spp.: a comparative genomics study Genome Biol, 8, R259.

Gene Locus tag Genbank Remark Length Last change
CpcS-II subfamily sync_2487 YP_731681.1 203 09-26-2011
CpeT family sync_0509 YP_729736.1 208 09-26-2011
CpeS-II subfamily sync_0510 YP_729737.1 179 09-26-2011
CpeU-II subfamily sync_0492 YP_729719.1 200 11-25-2011
CpeY family sync_0499 YP_729726.1 442 09-26-2011
CpeZ family sync_0500 YP_729727.1 N-term shortened (15aa removed by FP: LLLSPAKIVKSSSCV) 208 09-26-2011
MpeU family sync_0501 YP_729728.1 291 10-25-2011
CpeF family sync_0497 YP_729724.1 301 10-25-2011
MpeY family sync_0506 YP_729733.1 398 09-26-2011
MpeZ family sync_2228 YP_731426.1 409 09-26-2011
RpcT family sync_0487 YP_729714.1 196 09-26-2011
IaiH family sync_2351 YP_731548.1 269 10-26-2011
CotB homologs 1 family sync_0128 YP_729365.1 208 09-26-2011
RpcE subfamily sync_0486 YP_729713.1 N-term extended 265 09-28-2012
RpcF subfamily sync_0485 YP_729712.1 209 09-26-2011
CpcU-II subfamily sync_0774 YP_729988.1 158 11-04-2011

Model strain Model strains, Marine strains

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