CpcS-I subfamily
[fasta] [only sure] [only unsure]
Description
Classification proposed by Shen et al. (2008) and Schluchter et al. (2010). CpcS-I forms a heterodimer with CpcU-I in Synechococcus sp. PCC 7002 (Saunée et al., 2008; Shen et al., 2008). All strains containing a CpcS-I homolog also possess a CpcU-I homolog, except Synechococcus sp. PCC 7335 (see phyletic profiles).
Motif
A motif characterising this family is available.
References
- Saunée et al., 2008. Biogenesis of phycobiliproteins: II. CpcS-I and CpcU comprise the heterodimeric bilin lyase that attaches phycocyanobilin to Cys-82 of beta-phycocyanin and Cys-81 of allophycocyanin subunits in Synechococcus sp. PCC 7002 J Biol Chem, 283, 7513-7522.
- Schluchter et al., 2010. Phycobiliprotein Biosynthesis in Cyanobacteria: Structure and Function of Enzymes Involved in Post-translational Modification Adv Exp Med Biol, 675, 211-228.
- Shen et al., 2008. Biogenesis of phycobiliproteins: I. cpcS-I and cpcU mutants of the cyanobacterium Synechococcus sp. PCC 7002 define a heterodimeric phycocyanobilin lyase specific for beta-phycocyanin and allophycocyanin subunits J Biol Chem, 283, 7503-7512.
| Gene | Locus tag | Genbank | Species | Strain | PBP in rods | Pigment type | Remark | Length | Last change |
|---|---|---|---|---|---|---|---|---|---|
| CpcS-I subfamily | S7335_4321 | ZP_05037881.1 | Synechococcus sp. | PCC7335 | PC+PEI | CA3 | This sequence is closely related to CpcS-I, but the genome of PCC7335 apparently does not contain any CpcU-I, possibly because it is incomplete. | 200 | 10-03-2012 |
| CpcS-I subfamily | SYNPCC7002_A1822 | YP_001735066.1 | Synechococcus sp. | PCC7002 | PC | 1 | 198 | 09-26-2011 | |
| CpcS-I subfamily | slr2049 | NP_440437.1 | Synechocystis sp. | PCC6803 (ATCC27184) | PC | 1 | 192 | 09-26-2011 | |
| CpcS-I subfamily | AmaxDRAFT_2794 | ZP_03273970.1 | Arthrospira (Spirulina) maxima | CS-328 | PC | 1 | 197 | 09-26-2011 | |
| CpcS-I subfamily | CwatDRAFT_6342 | ZP_00514111.1 | Crocosphaera watsonii | WH8501 | PC+PEI | 197 | 09-26-2011 | ||
| CpcS-I subfamily | cce_3207 | YP_001804621.1 | Cyanothece sp. | ATCC51142 | PC | 1 | 198 | 09-26-2011 | |
| CpcS-I subfamily | PCC7424_3509 | YP_002378769.1 | Cyanothece sp. | PCC7424 | PC+PEI | 2 | 197 | 09-26-2011 | |
| CpcS-I subfamily | PCC8801_1352 | YP_002371570.1 | Cyanothece sp. | PCC8801 | PC+PEI | 2 | 200 | 09-26-2011 | |
| CpcS-I subfamily | Cyan8802_1382 | YP_003137135.1 | Cyanothece sp. | PCC8802 | PC | 1 | 200 | 09-26-2011 | |
| CpcS-I subfamily | CY0110_04081 | ZP_01730273.1 | Cyanothece sp. | CCY0110 | PC | 1 | 197 | 09-26-2011 | |
| CpcS-I subfamily | Cyan7822_2533 | YP_003887780.1 | Cyanothece sp. | PCC7822 | PC+PEI | 2 | 198 | 09-26-2011 | |
| CpcS-I subfamily | GL6909_5285 | Gloeothece sp. | PCC6909/1 | PC+PEI | 2 | 198 | 05-31-2011 | ||
| CpcS-I subfamily | L8106_24665 | ZP_01619909.1 | Lyngbya aestuarii | CCY9616 (PCC8106/CCY8106) | PC | 1 | No other start codon before this sequence | 197 | 09-26-2011 |
| CpcS-I subfamily | MAE_48330 | YP_001659847.1 | Microcystis aeruginosa | NIES-843 | PC | 1 | A stop codon, then 4aa, then the start codon | 193 | 09-26-2011 |
| CpcS-I subfamily | Npun_F3809 | YP_001867136.1 | Nostoc punctiforme | ATCC29133 (PCC73102) | PC+PEI | 2 | CpcSIII in Schluchter et al., 2010? | 206 | 09-26-2011 |
| CpcS-I subfamily | gvip161 | NP_924137.1 | Gloeobacter violaceus | PCC7421 | PC+PEI | 2 | strange position in phylogenetic trees | 201 | 01-18-2018 |
| CpcS-I subfamily | Synpcc7942_2031 | YP_401048.1 | Synechococcus elongatus | PCC7942 | PC | 1 | 193 | 09-26-2011 | |
| CpcS-I subfamily | syc2064_d | YP_172774.1 | Synechococcus elongatus | PCC6301 (ATCC 27144) | PC | 1 | 193 | 11-25-2011 | |
| CpcS-I subfamily | Tery_3908 | YP_723414.1 | Trichodesmium erythraeum | IMS101 | PC+PEI | N-term shortened (5 aa removed: MEYRL) | 196 | 08-30-2012 | |
| CpcS-I subfamily | OSCI_700007 | ZP_07109069.1 | Oscillatoria sp. | PCC6506 (PCC9029/ATCC29081 /UTEX 1547) | PC | 1 | 197 | 10-19-2011 | |
| CpcS-I subfamily | LYNGBM3L_55940 | ZP_08427741.1 | Lyngbya majuscula | 3L | PC+PEI | 2 | 216 | 10-19-2011 | |
| CpcS-I subfamily | MicvaDRAFT_5174 | ZP_08495221.1 | Microcoleus vaginatus | FGP-2 | PC | 1 | 198 | 10-20-2011 | |
| CpcS-I subfamily | IPF_855 | CAO87966.1 | Microcystis aeruginosa | PCC7806 | PC | 1 | 193 | 10-20-2011 | |
| CpcS-I subfamily | NIES39_A02700 | BAI88109.1 | Arthrospira (Spirulina) platensis | NIES-39 | PC | 1 | 197 | 10-20-2011 | |
| CpcS-I subfamily | Cy51472DRAFT_4686 | ZP_08975889.1 | Cyanothece sp. | ATCC51472 | PC | 1 | 198 | 01-10-2012 | |
| CpcS-I subfamily | AplaP_010100006702 | ZP_06381354.1 | Arthrospira (Spirulina) platensis | Paraca | PC | 1 | 197 | 01-24-2012 | |
| CpcS-I subfamily | ACCM5_010100032969 | ZP_09252138.1 | Acaryochloris sp. | CCMEE5410 | APC only | 196 | 08-24-2012 | ||
| CpcS-I subfamily | CWATWH0003_0565 | EHJ14767.1 | Crocosphaera watsonii | WH0003 | PC+PEI | 197 | 02-22-2012 | ||
| CpcS-I subfamily | MICAI_250011 | ZP_10228158.1 | Microcystis sp. | T1-4 | PC+PEI | 2 | 193 | 09-16-2012 | |
| CpcS-I subfamily | MICAG_860004 | CCI29527.1 | Microcystis aeruginosa | PCC9808 | PC | 1 | 193 | 08-22-2012 | |
| CpcS-I subfamily | MICAB_3830008 | CCH97799.1 | Microcystis aeruginosa | PCC9717 | PC | 1 | 193 | 08-23-2012 | |
| CpcS-I subfamily | MICAK_3480004 | CCI37760.1 | Microcystis aeruginosa | PCC9701 | PC | 1 | 193 | 08-23-2012 | |
| CpcS-I subfamily | MICAC_4950001 | CCI03754.1 | Microcystis aeruginosa | PCC9443 | PC | 1 | 193 | 08-23-2012 | |
| CpcS-I subfamily | MICCA_980010 | ZP_18815604.1 | Microcystis aeruginosa | PCC9432 | PC | 1 | 193 | 04-22-2013 | |
| CpcS-I subfamily | MICAD_310004 | CCI08315.1 | Microcystis aeruginosa | PCC7941 | PC | 1 | 193 | 08-23-2012 | |
| CpcS-I subfamily | Osc7112_3154 | YP_007115956.1 | Oscillatoria nigro-viridis | PCC7112 | PC+PEI | 2 | 198 | 04-22-2013 | |
| CpcS-I subfamily | Sta7437_2864 | YP_007133350.1 | Stanieria cyanosphaera | PCC7437 | PC+PEI | 199 | 04-22-2013 | ||
| CpcS-I subfamily | O53_3911 | ZP_20934710.1 | Microcystis aeruginosa | TAIHU98 | PC | 1 | 193 | 04-22-2013 | |
| CpcS-I subfamily | Lepto7376_3399 | YP_007072440.1 | Leptolyngbya sp. | PCC7376 | PC+PEI | 200 | 04-23-2013 | ||
| CpcS-I subfamily | Cyast_1790 | YP_007165395.1 | Cyanobacterium stanieri | PCC7202 | PC | 196 | 04-23-2013 | ||
| CpcS-I subfamily | Ple7327_2633 | YP_007081472.1 | Pleurocapsa sp. | PCC7327 | PC+PEI | 198 | 04-23-2013 | ||
| CpcS-I subfamily | Xen7305DRAFT_00011740 | ZP_21056994.1 | Xenococcus sp. | PCC7305 | PC+PEI | 199 | 04-23-2013 | ||
| CpcS-I subfamily | PCC7418_3218 | YP_007169548.1 | Halothece sp. | PCC7418 | PC | 193 | 04-23-2013 | ||
| CpcS-I subfamily | GLO73106DRAFT_00025640 | ZP_21050308.1 | Gloeocapsa sp. | PCC73106 | PC+PEI | 197 | 04-23-2013 | ||
| CpcS-I subfamily | Dacsa_0540 | YP_007170680.1 | Dactylococcopsis salina | PCC8305 | 194 | 04-23-2013 | |||
| CpcS-I subfamily | Pse7367_3816 | YP_007083475.1 | Pseudanabaena sp. | PCC7367 | PC+PEI | 208 | 04-23-2013 | ||
| CpcS-I subfamily | Mic7113_2585 | YP_007121784.1 | Microcoleus sp. | PCC7113 | PC+PEI | 2 | 205 | 04-23-2013 | |
| CpcS-I subfamily | ZP_18908102 | ZP_18908102.1 | Leptolyngbya sp. | PCC7375 | PC+PEI | 2 | 204 | 04-23-2013 | |
| CpcS-I subfamily | Pse7429DRAFT_3448 | ZP_21067785.1 | Pseudanabaena sp. (biceps) | PCC7429 | PC | 200 | 04-24-2013 | ||
| CpcS-I subfamily | Oscil6304_1130 | YP_007084776.1 | Oscillatoria acuminata | PCC6304 (SAG 1449-3) | PC | 203 | 04-29-2013 | ||
| CpcS-I subfamily | Cyan10605_0823 | YP_007160999.1 | Cyanobacterium aponimum | PCC10605 | 194 | 04-29-2013 | |||
| CpcS-I subfamily | Cha6605_1319 | YP_007096040.1 | Chamaesiphon minutus | PCC6605 | PC+PEI | 200 | 04-29-2013 | ||
| CpcS-I subfamily | LepboDRAFT_3190 | Leptolyngbya boryana | PCC6306 | PC | 195 | 06-11-2013 | |||
| CpcS-I subfamily | Osc10802DRAFT_6754 | Oscillatoria sp. | PCC10802 | PC+PEI | 204 | 06-12-2013 | |||
| CpcS-I subfamily | Cal6303_1002 | YP_007136039.1 | Calothrix sp. | PCC6303 | PC+PEI | 2 | 196 | 06-20-2013 | |
| CpcS-I subfamily | Lep6406DRAFT_00042270 | ZP_21044550.1 | Leptolyngbya sp. | PCC6406 | PC+PEC | 198 | 06-20-2013 |
Model strains, Marine strains
Last update: 20 Apr 2023 15:02:00
