CpeT family
[fasta] [only sure] [only unsure]
Description
CpeT from the Prochlorococcus marinus MED4 cyanophage P-HM1 was biochemically characterized and its structure resolved at 1.8-Å (Protein Data Bank ID: 5HI8). It attaches a PEB at Cys-155 of beta-PEI (Gasper et al. 2017) and perhaps at the corresponding position in beta-PEII of marine Synechococcus cyanobacteria. CpeT was also characterized in the red alga Gracilariopsis lemaneiformis as a PEB:Cys-158 beta-phycoerythrin lyase (Cao et al. 2019).
Motif
A motif characterising this family is available.
References
- Cao et al., 2019. Molecular cloning of the cpeT gene encoding a bilin lyase responsible for attachment of phycoerythrobilin to Cys-158 on the β-subunit of phycoerythrin in Gracilariopsis lemaneiformis J Appl Phycol, 1-10.
- Gasper et al., 2017. Distinct features of cyanophage-encoded T-type phycobiliprotein lyase Phi-CpeT: The role of auxilliary genes J Biol Chem, 292, 3089-3098.
| Gene | Locus tag | Genbank | Species | Strain | PBP in rods | Pigment type | Remark | Length | Last change |
|---|---|---|---|---|---|---|---|---|---|
| CpeT family | sync_0509 | YP_729736.1 | Synechococcus sp. | CC9311 | PC+PEI+PEII | 3dA/CA4-A | 208 | 09-26-2011 | |
| CpeT family | Syncc9605_0440 | YP_380771.1 | Synechococcus sp. | CC9605 | PC+PEI+PEII | 3c | 204 | 09-26-2011 | |
| CpeT family | SH8109_0065 | ZP_05789950.1 | Synechococcus sp. | WH8109 | PC+PEI+PEII | 3bB | 204 | 09-26-2011 | |
| CpeT family | SYNW2003 | NP_898094.1 | Synechococcus sp. | WH8102 | PC+PEI+PEII | 3c | 204 | 09-26-2011 | |
| CpeT family | Syncc9902_1887 | YP_377888.1 | Synechococcus sp. | CC9902 | PC+PEI+PEII | 3dA/CA4-A | 204 | 09-26-2011 | |
| CpeT family | BL107_08986 | ZP_01469900.1 | Synechococcus sp. | BL107 | PC+PEI+PEII | 3dA/CA4-A | 204 | 09-26-2011 | |
| CpeT family | SynWH7803_0498 | YP_001224221.1 | Synechococcus sp. | WH7803 | PC+PEI+PEII | 3a | 204 | 09-26-2011 | |
| CpeT family | WH7805_06676 | ZP_01123335.1 | Synechococcus sp. | WH7805 | PC+PEI | 2 | 203 | 09-26-2011 | |
| CpeT family | RS9916_40266 | ZP_01473096.1 | Synechococcus sp. | RS9916 | PC+PEI+PEII | 3dA/CA4-A | 203 | 07-02-2013 | |
| CpeT family | SynRCC307_2042 | YP_001228298.1 | Synechococcus sp. | RCC307 | PC+PEI+PEII | 3eA | 208 | 09-26-2011 | |
| CpeT family | SCB02_010100004288 | ZP_07970127.1 | Synechococcus sp. | CB0205 | PC+PEI | 2 | 203 | 11-04-2011 | |
| CpeT family | S7335_3658 | ZP_05037220.1 | Synechococcus sp. | PCC7335 | PC+PEI | CA3 | 213 | 09-26-2011 | |
| CpeT family | Syn8016DRAFT_2760 | ZP_08957413.1 | Synechococcus sp. | WH8016 | PC+PEI+PEII | 3aA | 201 | 11-04-2011 | |
| CpeT family | NATL1_03901 | YP_001014219.1 | Prochlorococcus marinus | NATL1A | PEIII | high b/a | 199 | 09-26-2011 | |
| CpeT family | PMN2A_1676 | YP_292867.1 | Prochlorococcus marinus | NATL2A | PEIII | high b/a | 199 | 09-26-2011 | |
| CpeT family | Pro0342 | NP_874736.1 | Prochlorococcus marinus | SS120 (CCMP1375) | PEIII | high b/a | 195 | 09-26-2011 | |
| CpeT family | P9211_03371 | YP_001550222.1 | Prochlorococcus marinus | MIT9211 | PEIII | High b/a | 192 | 09-26-2011 | |
| CpeT family | P9303_22311 | YP_001018231.1 | Prochlorococcus sp. | MIT9303 | PEIII | high b/a | 204 | 09-26-2011 | |
| CpeT family | PMT1678 | NP_895505.1 | Prochlorococcus sp. | MIT9313 | PEIII | high b/a | 204 | 09-26-2011 | |
| CpeT family | CwatDRAFT_0664 | ZP_00518424.1 | Crocosphaera watsonii | WH8501 | PC+PEI | Several possible starts. This second (complete) cpeT copy is only distantly related to the other (partial) cpeT copy. | 215 | 09-25-2012 | |
| CpeT family | PCC7424_5722 | YP_002381017.1 | Cyanothece sp. | PCC7424 | PC+PEI | 2 | 204 | 09-26-2011 | |
| CpeT family | PCC8801_4526 | YP_002364803.1 | Cyanothece sp. | PCC8801 | PC+PEI | 2 | 200 | 09-26-2011 | |
| CpeT family | Cyan7822_4032 | YP_003889232.1 | Cyanothece sp. | PCC7822 | PC+PEI | 2 | 206 | 09-26-2011 | |
| CpeT family | gi|145967348|gb|ABP99030.1| | ABP99030.1 | Fremyella diplosiphon (Tolypothrix sp. / Calothrix sp.) | Fd33 (UTEX481/PCC7601) | PC+PEI | CA3 | 207 | 09-26-2011 | |
| CpeT family | gvip163 | NP_924139.1 | Gloeobacter violaceus | PCC7421 | PC+PEI | 2 | 203 | 11-24-2011 | |
| CpeT family | GL6909_3549 | Gloeothece sp. | PCC6909/1 | PC+PEI | 2 | 201 | 06-01-2011 | ||
| CpeT family | Npun_F0738 | YP_001864433.1 | Nostoc punctiforme | ATCC29133 (PCC73102) | PC+PEI | 2 | 209 | 09-26-2011 | |
| CpeT family | Tery_0979 | YP_720833.1 | Trichodesmium erythraeum | IMS101 | PC+PEI | 209 | 09-26-2011 | ||
| CpeT family | LYNGBM3L_16720 | ZP_08428243.1 | Lyngbya majuscula | 3L | PC+PEI | 2 | 203 | 10-19-2011 | |
| CpeT family | CwatDRAFT_5720 | ZP_00514725.1 | Crocosphaera watsonii | WH8501 | PC+PEI | Similar to CpeT, but with a 51 aa deletion in the middle. N- and C-term closely related to WH0003 cpeT sequence. | 149 | 09-26-2012 | |
| CpeT family | CWATWH0003_1104 | EHJ14215.1 | Crocosphaera watsonii | WH0003 | PC+PEI | 200 | 02-22-2012 | ||
| CpeT family | MICAI_380006 | ZP_10229443.1 | Microcystis sp. | T1-4 | PC+PEI | 2 | 197 | 08-22-2012 | |
| CpeT family | Ple7327_0105 | YP_007079148.1 | Pleurocapsa sp. | PCC7327 | PC+PEI | 194 | 04-23-2013 | ||
| CpeT family | Mic7113_4757 | YP_007123836.1 | Microcoleus sp. | PCC7113 | PC+PEI | 2 | 206 | 04-23-2013 | |
| CpeT family | Osc7112_1029 | YP_007114003.1 | Oscillatoria nigro-viridis | PCC7112 | PC+PEI | 2 | 200 | 04-23-2013 | |
| CpeT family | Xen7305DRAFT_00019030 | ZP_21056251.1 | Xenococcus sp. | PCC7305 | PC+PEI | 209 | 04-23-2013 | ||
| CpeT family | Pse7367_3899 | YP_007083554.1 | Pseudanabaena sp. | PCC7367 | PC+PEI | 212 | 04-23-2013 | ||
| CpeT family | GLO73106DRAFT_00012570 | ZP_21051593.1 | Gloeocapsa sp. | PCC73106 | PC+PEI | 197 | 04-23-2013 | ||
| CpeT family | ZP_18907659 | ZP_18907659.1 | Leptolyngbya sp. | PCC7375 | PC+PEI | 2 | 203 | 04-23-2013 | |
| CpeT family | Lepto7376_0476 | YP_007069742.1 | Leptolyngbya sp. | PCC7376 | PC+PEI | 208 | 04-24-2013 | ||
| CpeT family | Sta7437_0961 | YP_007131509.1 | Stanieria cyanosphaera | PCC7437 | PC+PEI | 208 | 04-29-2013 | ||
| CpeT family | Cha6605_4068 | YP_007098551.1 | Chamaesiphon minutus | PCC6605 | PC+PEI | 201 | 04-29-2013 | ||
| CpeT family | Cal6303_1333 | YP_007136365.1 | Calothrix sp. | PCC6303 | PC+PEI | 2 | 209 | 04-29-2013 | |
| CpeT family | Osc10802DRAFT_5369 | Oscillatoria sp. | PCC10802 | PC+PEI | 200 | 06-12-2013 |
Model strains, Marine strains
Last update: 24 Apr 2023 9:05:59
