CpcS-II subfamily
[fasta] [only sure] [only unsure]
Description
Classification proposed by Shen et al. (2008) and Schluchter et al. (2010). This subfamily contain only marine Synechococcus and Cyanobium. Co-occurrence with CpcU-II in phyletic profiles suggests that CpcS-II form an heterodimer with CpcU-II .
Motif
A motif characterising this family is available.
References
- Schluchter et al., 2010. Phycobiliprotein Biosynthesis in Cyanobacteria: Structure and Function of Enzymes Involved in Post-translational Modification Adv Exp Med Biol, 675, 211-228.
- Shen et al., 2008. Biogenesis of phycobiliproteins: I. cpcS-I and cpcU mutants of the cyanobacterium Synechococcus sp. PCC 7002 define a heterodimeric phycocyanobilin lyase specific for beta-phycocyanin and allophycocyanin subunits J Biol Chem, 283, 7503-7512.
- Six et al., 2007. Diversity and evolution of phycobilisomes in marine Synechococcus spp.: a comparative genomics study Genome Biol, 8, R259.
| Gene | Locus tag | Genbank | Species | Strain | PBP in rods | Pigment type | Remark | Length | Last change |
|---|---|---|---|---|---|---|---|---|---|
| CpcS-II subfamily | sync_2487 | YP_731681.1 | Synechococcus sp. | CC9311 | PC+PEI+PEII | 3dA/CA4-A | 203 | 09-26-2011 | |
| CpcS-II subfamily | Syncc9605_2286 | YP_382575.1 | Synechococcus sp. | CC9605 | PC+PEI+PEII | 3c | 197 | 09-26-2011 | |
| CpcS-II subfamily | SH8109_0894 | ZP_05790285.1 | Synechococcus sp. | WH8109 | PC+PEI+PEII | 3bB | 197 | 09-26-2011 | |
| CpcS-II subfamily | SYNW0315 | NP_896410.1 | Synechococcus sp. | WH8102 | PC+PEI+PEII | 3c | 198 | 09-26-2011 | |
| CpcS-II subfamily | Syncc9902_0400 | YP_376414.1 | Synechococcus sp. | CC9902 | PC+PEI+PEII | 3dA/CA4-A | 198 | 09-26-2011 | |
| CpcS-II subfamily | BL107_17200 | ZP_01468673.1 | Synechococcus sp. | BL107 | PC+PEI+PEII | 3dA/CA4-A | 198 | 09-26-2011 | |
| CpcS-II subfamily | SynWH7803_2155 | YP_001225878.1 | Synechococcus sp. | WH7803 | PC+PEI+PEII | 3a | 196 | 09-26-2011 | |
| CpcS-II subfamily | WH7805_11643 | ZP_01122710.1 | Synechococcus sp. | WH7805 | PC+PEI | 2 | 196 | 09-26-2011 | |
| CpcS-II subfamily | RS9917_07715 | ZP_01081133.1 | Synechococcus sp. | RS9917 | PC | 1 | 206 | 09-26-2011 | |
| CpcS-II subfamily | RS9916_35312 | ZP_01471093.1 | Synechococcus sp. | RS9916 | PC+PEI+PEII | 3dA/CA4-A | 202 | 09-26-2011 | |
| CpcS-II subfamily | WH5701_15871 | ZP_01084219.1 | Synechococcus sp. | WH5701 | PC | 1 | Frameshifted; join(2811210..2811479,2811479..2811838) | 209 | 09-26-2011 |
| CpcS-II subfamily | SynRCC307_2024 | YP_001228280.1 | Synechococcus sp. | RCC307 | PC+PEI+PEII | 3eA | 196 | 09-26-2011 | |
| CpcS-II subfamily | SCB01_010100002463 | ZP_07972490.1 | Synechococcus sp. | CB0101 | PC | 1 | MAACDHRCTRRAA removed at the beginning | 203 | 11-04-2011 |
| CpcS-II subfamily | SCB02_010100000529 | ZP_07969387.1 | Synechococcus sp. | CB0205 | PC+PEI | 2 | 201 | 11-04-2011 | |
| CpcS-II subfamily | CPCC7001_2732 | ZP_05046541.1 | Cyanobium sp. | PCC7001 | PC | 1 | 200 | 09-26-2011 | |
| CpcS-II subfamily | Syn8016DRAFT_2357 | ZP_08957012.1 | Synechococcus sp. | WH8016 | PC+PEI+PEII | 3aA | 203 | 11-04-2011 | |
| CpcS-II subfamily | PCC_0659 | YP_002049288.1 | Paulinella chromatophora | M0880 | PC | 1 | Protoscan score is not very high, but it matches CpcS-II best | 198 | 08-30-2012 |
| CpcS-II subfamily | SynWH8020_CpcSII | Synechococcus sp. | WH8020 | PC+PEI+PEII | 3dA/CA4-A | From unpublished WH8020 genome | 203 | 08-27-2012 | |
| CpcS-II subfamily | Cyagr_1540 | YP_007046040.1 | Cyanobium gracile | PCC6307 | PC | 206 | 04-29-2013 |
Model strains, Marine strains
Last update: 20 Apr 2023 15:25:17
