CpcU-II subfamily
[fasta] [only sure] [only unsure]
Description
Present only in marine Synechococcus and in Cyanobium spp. Not formally characterized yet but it likely forms a heterodimer with CpcS-II. Indeed, CpcU-II sequences are most closely related to CpcU-I and they have the same phyletic profile as CpcS-II.
Motif
A motif characterising this family is available.
| Gene | Locus tag | Genbank | Species | Strain | PBP in rods | Pigment type | Remark | Length | Last change |
|---|---|---|---|---|---|---|---|---|---|
| CpcU-II subfamily | PCC_0138 | YP_002048800.1 | Paulinella chromatophora | M0880 | PC | 1 | 157 | 09-16-2012 | |
| CpcU-II subfamily | BL107_11196 | ZP_01469616.1 | Synechococcus sp. | BL107 | PC+PEI+PEII | 3dA/CA4-A | 154 | 11-04-2011 | |
| CpcU-II subfamily | sync_0774 | YP_729988.1 | Synechococcus sp. | CC9311 | PC+PEI+PEII | 3dA/CA4-A | 158 | 11-04-2011 | |
| CpcU-II subfamily | Syncc9605_0889 | YP_381212.1 | Synechococcus sp. | CC9605 | PC+PEI+PEII | 3c | 153 | 11-04-2011 | |
| CpcU-II subfamily | Syncc9902_1509 | YP_377511.1 | Synechococcus sp. | CC9902 | PC+PEI+PEII | 3dA/CA4-A | 154 | 11-04-2011 | |
| CpcU-II subfamily | SynRCC307_1726 | YP_001227982.1 | Synechococcus sp. | RCC307 | PC+PEI+PEII | 3eA | 151 | 11-04-2011 | |
| CpcU-II subfamily | RS9916_33072 | ZP_01470645.1 | Synechococcus sp. | RS9916 | PC+PEI+PEII | 3dA/CA4-A | N-term possibly 12 aa too long | 169 | 09-16-2012 |
| CpcU-II subfamily | RS9917_01916 | ZP_01081335.1 | Synechococcus sp. | RS9917 | PC | 1 | 156 | 11-04-2011 | |
| CpcU-II subfamily | WH5701_14506 | ZP_01083946.1 | Synechococcus sp. | WH5701 | PC | 1 | 162 | 11-04-2011 | |
| CpcU-II subfamily | SynWH7803_1725 | YP_001225448.1 | Synechococcus sp. | WH7803 | PC+PEI+PEII | 3a | 153 | 11-04-2011 | |
| CpcU-II subfamily | WH7805_05516 | ZP_01124634.1 | Synechococcus sp. | WH7805 | PC+PEI | 2 | N-term shortened (7 aa removed: MSCEDGS) | 153 | 09-16-2012 |
| CpcU-II subfamily | SYNW1611 | NP_897704.1 | Synechococcus sp. | WH8102 | PC+PEI+PEII | 3c | 154 | 11-04-2011 | |
| CpcU-II subfamily | Syn8016DRAFT_2448 | ZP_08957102.1 | Synechococcus sp. | WH8016 | PC+PEI+PEII | 3aA | 158 | 12-02-2011 | |
| CpcU-II subfamily | SH8109_1400 | ZP_05790078.1 | Synechococcus sp. | WH8109 | PC+PEI+PEII | 3bB | 153 | 12-02-2011 | |
| CpcU-II subfamily | SCB02_010100006257 | ZP_07970508.1 | Synechococcus sp. | CB0205 | PC+PEI | 2 | 154 | 12-02-2011 | |
| CpcU-II subfamily | SCB01_010100010455 | ZP_07974079.1 | Synechococcus sp. | CB0101 | PC | 1 | 161 | 12-02-2011 | |
| CpcU-II subfamily | CPCC7001_xx | Cyanobium sp. | PCC7001 | PC | 1 | Found using tblastn. Orf not detected in refseq. | 166 | 02-21-2012 | |
| CpcU-II subfamily | Cyagr_1229 | YP_007045748.1 | Cyanobium gracile | PCC6307 | PC | 177 | 04-29-2013 |
Model strains, Marine strains
Last update: 20 Apr 2023 15:07:50
