CpeU-II subfamily
[fasta] [only sure] [only unsure]
Description
includes all PE-containing strains marine Synechococcus and Cyanobium.
Motif
A motif characterising this family is available.
References
- Grébert et al., 2022. Diversity and evolution of pigment types in marine Synechococcus cyanobacteria Genome Biol Evol, 14, evac035.
| Gene | Locus tag | Genbank | Species | Strain | PBP in rods | Pigment type | Remark | Length | Last change |
|---|---|---|---|---|---|---|---|---|---|
| CpeU-II subfamily | sync_0492 | YP_729719.1 | Synechococcus sp. | CC9311 | PC+PEI+PEII | 3dA/CA4-A | 200 | 11-25-2011 | |
| CpeU-II subfamily | Syncc9605_0424 | YP_380755.1 | Synechococcus sp. | CC9605 | PC+PEI+PEII | 3c | 203 | 11-25-2011 | |
| CpeU-II subfamily | SH8109_0086 | ZP_05788514.1 | Synechococcus sp. | WH8109 | PC+PEI+PEII | 3bB | 203 | 11-25-2011 | |
| CpeU-II subfamily | SYNW2019 | NP_898110.1 | Synechococcus sp. | WH8102 | PC+PEI+PEII | 3c | 204 | 11-25-2011 | |
| CpeU-II subfamily | Syncc9902_1905 | YP_377906.1 | Synechococcus sp. | CC9902 | PC+PEI+PEII | 3dA/CA4-A | 205 | 11-25-2011 | |
| CpeU-II subfamily | BL107_08896 | ZP_01469882.1 | Synechococcus sp. | BL107 | PC+PEI+PEII | 3dA/CA4-A | N-term extended (8 aa added) | 205 | 09-17-2012 |
| CpeU-II subfamily | SynWH7803_0483 | YP_001224206.1 | Synechococcus sp. | WH7803 | PC+PEI+PEII | 3a | possible alternative start would make the sequence 2 aa longer (MP) | 201 | 09-17-2012 |
| CpeU-II subfamily | WH7805_06731 | ZP_01123346.1 | Synechococcus sp. | WH7805 | PC+PEI | 2 | N-term extended (8 aa added) | 193 | 09-17-2012 |
| CpeU-II subfamily | RS9916_40166 | ZP_01473076.1 | Synechococcus sp. | RS9916 | PC+PEI+PEII | 3dA/CA4-A | N-term extended (10 aa added) | 208 | 09-17-2012 |
| CpeU-II subfamily | SynRCC307_2060 | YP_001228316.1 | Synechococcus sp. | RCC307 | PC+PEI+PEII | 3eA | 202 | 11-25-2011 | |
| CpeU-II subfamily | SCB02_010100004388 | ZP_07970147.1 | Synechococcus sp. | CB0205 | PC+PEI | 2 | MIVEASFVVPMS not present in refseq | 206 | 11-25-2011 |
| CpeU-II subfamily | Syn8016DRAFT_2746 | ZP_08957399.1 | Synechococcus sp. | WH8016 | PC+PEI+PEII | 3aA | N-term shortened by 22aa (METVPTFQSNGPMTVSDSSLEV) | 204 | 11-25-2011 |
| CpeU-II subfamily | SynWH8020_CpeUII | AAA27342.1 | Synechococcus sp. | WH8020 | PC+PEI+PEII | 3dA/CA4-A | ORF200 in Wilbanks et al. (1993) | 200 | 08-27-2012 |
Model strains, Marine strains
Last update: 20 Apr 2023 15:23:41
