MpeY family
[fasta] [only sure] [only unsure]
Description
Gene present in the "PEII subregion" of the "phycobilisome rod gene region" of all PEII-containing marine Synechococcus strains (Six et al. 2007). This includes WH7803 which has a single PUB, most likely located either at Cys-75 of MpeA or Cys-50/61 of MpeB (Ong & Glazer 1991). MpeY is related to MpeZ and MpeW and more distantly to CpeY. We predict that MpeY is a PEII:PEB lyase-isomerase though its exact specificity remains to be defined.
Motif
A motif characterising this family is available.
References
- Six et al., 2007. Diversity and evolution of phycobilisomes in marine Synechococcus spp.: a comparative genomics study Genome Biol, 8, R259.
Gene | Locus tag | Genbank | Species | Strain | PBP in rods | Pigment type | Remark | Length | Last change |
---|---|---|---|---|---|---|---|---|---|
MpeY family | sync_0506 | YP_729733.1 | Synechococcus sp. | CC9311 | PC+PEI+PEII | 3dA/CA4-A | 398 | 09-26-2011 | |
MpeY family | Syncc9605_0436 | YP_380767.1 | Synechococcus sp. | CC9605 | PC+PEI+PEII | 3c | 398 | 09-26-2011 | |
MpeY family | SH8109_0069 | ZP_05788234.1 | Synechococcus sp. | WH8109 | PC+PEI+PEII | 3bB | 398 | 11-06-2011 | |
MpeY family | SYNW2007 | NP_898098.1 | Synechococcus sp. | WH8102 | PC+PEI+PEII | 3c | 398 | 09-26-2011 | |
MpeY family | Syncc9902_1892 | YP_377893.1 | Synechococcus sp. | CC9902 | PC+PEI+PEII | 3dA/CA4-A | 398 | 09-26-2011 | |
MpeY family | BL107_08961 | ZP_01469895.1 | Synechococcus sp. | BL107 | PC+PEI+PEII | 3dA/CA4-A | 400 | 09-26-2011 | |
MpeY family | SynWH7803_0494 | YP_001224217.1 | Synechococcus sp. | WH7803 | PC+PEI+PEII | 3a | 397 | 09-26-2011 | |
MpeY family | RS9916_40241 | ZP_01473091.1 | Synechococcus sp. | RS9916 | PC+PEI+PEII | 3dA/CA4-A | 398 | 09-26-2011 | |
MpeY family | SynRCC307_2047 | YP_001228303.1 | Synechococcus sp. | RCC307 | PC+PEI+PEII | 3eA | 398 | 09-26-2011 | |
MpeY family | Syn8016DRAFT_2756 | ZP_08957409.1 | Synechococcus sp. | WH8016 | PC+PEI+PEII | 3aA | 402 | 11-04-2011 |
Model strains, Marine strains
Last update: 09 Oct 2012 17:02:23