WH8016 strain

Subcluster: 5.1

Clade/Ecotype: I

Subclade: Ib

Phycobiliprotein types: PC+PEI+PEII

Pigment type: 3aA

Habitat: marine

Genome status: draft - assembled contigs

Sequencing center: JGI

Humily et al., 2013. A gene island with two possible configurations is involved in chromatic acclimation in marine Synechococcus PLoS One, 8, e84459.
Mazard et al., 2012. Multi-locus sequence analysis, taxonomic resolution and biogeography of marine Synechococcus Environmental Microbiology, 14, 372–386.

Showing only sure genes

Gene	Locus tag	Genbank	Remark	Length	Last change
CpcS-II subfamily	Syn8016DRAFT_2357	ZP_08957012.1		203	11-04-2011
CpeT family	Syn8016DRAFT_2760	ZP_08957413.1		201	11-04-2011
CpeS-II subfamily	Syn8016DRAFT_2761	ZP_08957414.1		179	11-04-2011
CpeU-II subfamily	Syn8016DRAFT_2746	ZP_08957399.1	N-term shortened by 22aa (METVPTFQSNGPMTVSDSSLEV)	204	11-25-2011
CpeY family	Syn8016DRAFT_2753	ZP_08957406.1		438	11-04-2011
CpeZ family	Syn8016DRAFT_2750	ZP_08957403.1		204	11-04-2011
CpeF family	Syn8016DRAFT_2751	ZP_08957404.1		308	11-04-2011
MpeY family	Syn8016DRAFT_2756	ZP_08957409.1		402	11-04-2011
RpcT family	Syn8016DRAFT_2741	ZP_08957394.1		196	11-04-2011
IaiH family	Syn8016DRAFT_2224	ZP_08956879.1		269	11-04-2011
CotB homologs 1 family	Syn8016DRAFT_1730	ZP_08956385.1		208	11-04-2011
RpcE subfamily	Syn8016DRAFT_2740	ZP_08957393.1		269	11-04-2011
RpcF subfamily	Syn8016DRAFT_2739	ZP_08957392.1		211	11-04-2011
CpcU-II subfamily	Syn8016DRAFT_2448	ZP_08957102.1		158	12-02-2011

Model strains, Marine strains

Last update: 19 Jan 2018 15:17:19