RpcE subfamily
[fasta] [only sure] [only unsure]
Description
Likely forms a heterodimer with RpcF. The activity of the RpcE/F complex was not formerly characterized but it is thought to attach a PEB at Cys-84 of alpha-PC-II in most PE-containing marine Synechococcus spp. RpcE and RpcF are closely related to CpcE and CpcF, respectively.
Motif
A motif characterising this family is available.
References
- Six et al., 2007. Diversity and evolution of phycobilisomes in marine Synechococcus spp.: a comparative genomics study Genome Biol, 8, R259.
- Wilbanks et al., 1993. Rod structure of a phycoerythrin II-containing phycobilisome. I. Organization and sequence of the gene cluster encoding the major phycobiliprotein rod components in the genome of marine Synechococcus sp. WH8020 J Biol Chem, 268, 1226-1235.
| Gene | Locus tag | Genbank | Species | Strain | PBP in rods | Pigment type | Remark | Length | Last change |
|---|---|---|---|---|---|---|---|---|---|
| RpcE subfamily | sync_0486 | YP_729713.1 | Synechococcus sp. | CC9311 | PC+PEI+PEII | 3dA/CA4-A | N-term extended | 265 | 09-28-2012 |
| RpcE subfamily | SH8109_0092 | ZP_05789298.1 | Synechococcus sp. | WH8109 | PC+PEI+PEII | 3bB | Sequence was incomplete (updated by FP) | 257 | 12-05-2011 |
| RpcE subfamily | Syncc9902_1911 | YP_377912.1 | Synechococcus sp. | CC9902 | PC+PEI+PEII | 3dA/CA4-A | 256 | 09-26-2011 | |
| RpcE subfamily | SynWH7803_0477 | YP_001224200.1 | Synechococcus sp. | WH7803 | PC+PEI+PEII | 3a | 256 | 09-26-2011 | |
| RpcE subfamily | Syn8016DRAFT_2740 | ZP_08957393.1 | Synechococcus sp. | WH8016 | PC+PEI+PEII | 3aA | 269 | 11-04-2011 | |
| RpcE subfamily | SynWH8020_rpcE | AAA27348.1 | Synechococcus sp. | WH8020 | PC+PEI+PEII | 3dA/CA4-A | 265 | 08-26-2012 |
Model strains, Marine strains
Last update: 20 Apr 2023 15:46:13
