CpeF family
[fasta] [only sure] [only unsure]
Description
CpeF was biochemically characterized as the lyase that ligates the doubly linked PEB on Cys-48,59 of β-phycoerythrin in Fremyella diplosiphon (Kronfel et al. 2019). It is related to the Synechococcus-specific lyase-isomerases MpeU (Mahmoud et al. 2017) and MpeV (Carrigee et al. 2021) and the yet uncharacterized Prochlorococcus-specific lyase (or lyase-isomerase?) MpeX (Hess et al. 1999).
Motif
A motif characterising this family is available.
References
- Carrigee et al., 2021. MpeV is a lyase isomerase that ligates a doubly linked phycourobilin on the β-subunit of phycoerythrin I and II in marine Synechococcus J Biol Chem, 296, 100031.
- Hess et al., 1999. Phycoerythrins of the oxyphotobacterium Prochlorococcus marinus are associated to the thylakoid membrane and are encoded by a single large gene cluster Plant Molecular Biology, 40, 507-521.
- Kronfel et al., 2019. CpeF is the bilin lyase that ligates the doubly linked phycoerythrobilin on β-phycoerythrin in the cyanobacterium Fremyella diplosiphon J Biol Chem.
- Mahmoud et al., 2017. Adaptation to blue light in marine Synechococcus requires MpeU, an enzyme with similarity to phycoerythrobilin lyase isomerases Front Microbiol, 8, 243.
| Gene | Locus tag | Genbank | Species | Strain | PBP in rods | Pigment type | Remark | Length | Last change |
|---|---|---|---|---|---|---|---|---|---|
| CpeF family | SynWH7803_0489 | YP_001224212.1 | Synechococcus sp. | WH7803 | PC+PEI+PEII | 3a | 298 | 10-25-2011 | |
| CpeF family | WH7805_06701 | ZP_01123340.1 | Synechococcus sp. | WH7805 | PC+PEI | 2 | 298 | 10-25-2011 | |
| CpeF family | SCB02_010100004358 | ZP_07970141.1 | Synechococcus sp. | CB0205 | PC+PEI | 2 | MLFPLLV not present in genbank | 305 | 11-04-2011 |
| CpeF family | S7335_3548 | ZP_05037110.1 | Synechococcus sp. | PCC7335 | PC+PEI | CA3 | 296 | 10-25-2011 | |
| CpeF family | Syn8016DRAFT_2751 | ZP_08957404.1 | Synechococcus sp. | WH8016 | PC+PEI+PEII | 3aA | 308 | 11-04-2011 | |
| CpeF family | CwatDRAFT_0409 | ZP_00518851.1 | Crocosphaera watsonii | WH8501 | PC+PEI | 288 | 10-25-2011 | ||
| CpeF family | PCC7424_5719 | YP_002381014.1 | Cyanothece sp. | PCC7424 | PC+PEI | 2 | 299 | 10-25-2011 | |
| CpeF family | PCC8801_4511 | YP_002364789.1 | Cyanothece sp. | PCC8801 | PC+PEI | 2 | 286 | 10-25-2011 | |
| CpeF family | Cyan7822_4029 | YP_003889229.1 | Cyanothece sp. | PCC7822 | PC+PEI | 2 | 294 | 10-25-2011 | |
| CpeF family | GL6909_3552 | Gloeothece sp. | PCC6909/1 | PC+PEI | 2 | 300 | 10-25-2011 | ||
| CpeF family | Npun_F3804 | YP_001867131.1 | Nostoc punctiforme | ATCC29133 (PCC73102) | PC+PEI | 2 | 300 | 10-25-2011 | |
| CpeF family | Tery_0978 | YP_720832.1 | Trichodesmium erythraeum | IMS101 | PC+PEI | N-term shortened (24 aa removed) | 310 | 08-30-2012 | |
| CpeF family | Tery_0987 | YP_720840.1 | Trichodesmium erythraeum | IMS101 | PC+PEI | Best BlastP hit on CpeF (but lower than Tery_0978) | 285 | 08-30-2012 | |
| CpeF family | gi|9622258|gb|AAF89697.1| | AAF89697.1 | Fremyella diplosiphon (Tolypothrix sp. / Calothrix sp.) | Fd33 (UTEX481/PCC7601) | PC+PEI | CA3 | 303 | 10-25-2011 | |
| CpeF family | gll1255 | NP_924201.1 | Gloeobacter violaceus | PCC7421 | PC+PEI | 2 | 290 | 10-25-2011 | |
| CpeF family | LYNGBM3L_55090 | ZP_08427735.1 | Lyngbya majuscula | 3L | PC+PEI | 2 | 289 | 10-28-2011 | |
| CpeF family | S7335_4282 | ZP_05037842.1 | Synechococcus sp. | PCC7335 | PC+PEI | CA3 | Low blast and protomatch score. | 332 | 01-02-2012 |
| CpeF family | CWATWH0003_5310t4 | EHJ09925.1 | Crocosphaera watsonii | WH0003 | PC+PEI | incomplete n-term (start of contig) | 262 | 02-22-2012 | |
| CpeF family | MICAI_2830021 | ZP_10228733.1 | Microcystis sp. | T1-4 | PC+PEI | 2 | 309 | 08-22-2012 | |
| CpeF family | Ple7327_1461 | YP_007080401.1 | Pleurocapsa sp. | PCC7327 | PC+PEI | 304 | 04-24-2013 | ||
| CpeF family | Mic7113_4746 | YP_007123825.1 | Microcoleus sp. | PCC7113 | PC+PEI | 2 | 303 | 04-24-2013 | |
| CpeF family | Osc7112_1017 | YP_007113991.1 | Oscillatoria nigro-viridis | PCC7112 | PC+PEI | 2 | 293 | 04-24-2013 | |
| CpeF family | Pse7367_3917 | YP_007083570.1 | Pseudanabaena sp. | PCC7367 | PC+PEI | 311 | 04-24-2013 | ||
| CpeF family | GLO73106DRAFT_00012620 | ZP_21051598.1 | Gloeocapsa sp. | PCC73106 | PC+PEI | 284 | 04-24-2013 | ||
| CpeF family | ZP_18907651 | ZP_18907651.1 | Leptolyngbya sp. | PCC7375 | PC+PEI | 2 | 303 | 04-24-2013 | |
| CpeF family | Lepto7376_4080 | YP_007073044.1 | Leptolyngbya sp. | PCC7376 | PC+PEI | 300 | 04-24-2013 | ||
| CpeF family | Xen7305DRAFT_00032330 | ZP_21054998.1 | Xenococcus sp. | PCC7305 | PC+PEI | 300 | 04-24-2013 | ||
| CpeF family | Cal6303_1005 | YP_007136042.1 | Calothrix sp. | PCC6303 | PC+PEI | 2 | 302 | 04-29-2013 | |
| CpeF family | Sta7437_3852 | YP_007134302.1 | Stanieria cyanosphaera | PCC7437 | PC+PEI | 295 | 04-29-2013 | ||
| CpeF family | Cha6605_4057 | YP_007098540.1 | Chamaesiphon minutus | PCC6605 | PC+PEI | 305 | 04-29-2013 | ||
| CpeF family | Cal6303_4952 | YP_007139821.1 | Calothrix sp. | PCC6303 | PC+PEI | 2 | 299 | 04-29-2013 |
Model strains, Marine strains
Last update: 21 Apr 2023 7:49:01
