RpcT family
[fasta] [only sure] [only unsure]
Description
Gene name proposed by Six et al. (2007). This enzyme is not formerly biochemically characterized yet, but indirect evidence suggests that it attaches a PEB at Cys-153 of beta-PC (Blot et al. 2009). RpcT is a paralog of CpcT, and they are located in different positions of the PBS rod region of marine Synechococcus spp. (Six et al. 2007, Grébert et al. 2022). Interestingly, strain RS9916 possesses both RpcT and CpcT, confirming the paralogy.
Motif
A motif characterising this family is available.
References
- Blot et al., 2009. Phycourobilin in Trichromatic Phycocyanin from Oceanic Cyanobacteria Is Formed Post-translationally by a Phycoerythrobilin Lyase-Isomerase J Biol Chem, 284, 9290-9298.
- Grébert et al., 2022. Diversity and evolution of pigment types in marine Synechococcus cyanobacteria Genome Biol Evol, 14, evac035.
- Six et al., 2007. Diversity and evolution of phycobilisomes in marine Synechococcus spp.: a comparative genomics study Genome Biol, 8, R259.
| Gene | Locus tag | Genbank | Species | Strain | PBP in rods | Pigment type | Remark | Length | Last change |
|---|---|---|---|---|---|---|---|---|---|
| RpcT family | sync_0487 | YP_729714.1 | Synechococcus sp. | CC9311 | PC+PEI+PEII | 3dA/CA4-A | 196 | 09-26-2011 | |
| RpcT family | Syncc9605_0419 | YP_380750.1 | Synechococcus sp. | CC9605 | PC+PEI+PEII | 3c | 192 | 09-26-2011 | |
| RpcT family | SH8109_0091 | ZP_05790483.1 | Synechococcus sp. | WH8109 | PC+PEI+PEII | 3bB | 197 | 09-26-2011 | |
| RpcT family | SYNW2024 | NP_898115.1 | Synechococcus sp. | WH8102 | PC+PEI+PEII | 3c | 197 | 09-26-2011 | |
| RpcT family | Syncc9902_1910 | YP_377911.1 | Synechococcus sp. | CC9902 | PC+PEI+PEII | 3dA/CA4-A | 200 | 09-26-2011 | |
| RpcT family | BL107_08871 | ZP_01469877.1 | Synechococcus sp. | BL107 | PC+PEI+PEII | 3dA/CA4-A | 192 | 09-26-2011 | |
| RpcT family | SynWH7803_0478 | YP_001224201.1 | Synechococcus sp. | WH7803 | PC+PEI+PEII | 3a | 197 | 09-26-2011 | |
| RpcT family | RS9916_40136 | ZP_01473070.1 | Synechococcus sp. | RS9916 | PC+PEI+PEII | 3dA/CA4-A | RS9916 possesses both cpcT and RpcT. | 197 | 09-21-2012 |
| RpcT family | Syn8016DRAFT_2741 | ZP_08957394.1 | Synechococcus sp. | WH8016 | PC+PEI+PEII | 3aA | 196 | 11-04-2011 | |
| RpcT family | SynWH8020_rpcT | AAA27347.1 | Synechococcus sp. | WH8020 | PC+PEI+PEII | 3dA/CA4-A | ORF196 in Wilbanks et al. (1993) | 196 | 08-27-2012 |
Model strains, Marine strains
Last update: 24 Apr 2023 9:07:06
