CyanoLyase

NblB family

Description

NblB has a role in PBS degradation (together with NblA and NblC). A Synechococcus sp. PCC7942 nblB-less mutant was shown to lack the ability to degrade its phycobilisomes during either sulfur or nitrogen limitation and exhibited an increased ratio of phycocyanin to chlorophyll during nutrient-replete growth (Dolganov and Grossman, 1999). NblB is absent from marine picocyanobacteria.

References

  • Dolganov et al., 1999. A polypeptide with similarity to phycocyanin alpha-subunit phycocyanobilin lyase involved in degradation of phycobilisomes J Bacteriol, 181, 610-617.
  • Li et al., 2002. Characterization of Synechocystis sp. strain PCC 6803 and Delta nbl mutants under nitrogen-deficient conditions Archiv Microbiol, 178, 256-266.

( 8tD> PCC6301 (ATCC 27144) NblB family
Gene Locus tag Genbank Species Strain PBP in rods Pigment type Remark Length Last change
NblB family L8106_00260 ZP_01624763.1 Lyngbya aestuarii CCY9616 (PCC8106/CCY8106) PC 1 223 09-26-2011
NblB family S7335_5595 ZP_05039147.1 Synechococcus sp. PCC7335 PC+PEI CA3 Blastp 223 09-26-2011
NblB family SYNPCC7002_A0348 YP_001733614.1 Synechococcus sp. PCC7002 PC 1 Blastp 218 09-26-2011
NblB family sll1663 NP_440142.1 Synechocystis sp. PCC6803 (ATCC27184) PC 1 Blastp 220 09-26-2011
NblB family alr3814 NP_487854.1 Anabaena (Nostoc) sp. PCC7120 PC+PEC Blastp 220 09-26-2011
NblB family Ava_1888 YP_322405.1 Anabaena variabilis ATCC29413 (PCC7937) PC+PEC Blastp 220 09-27-2011
NblB family Aazo_0577 YP_003720196.1 Anabaena (Nostoc) azollae 0708 PC+PEC Blastp 218 09-26-2011
NblB family AmaxDRAFT_4484 ZP_03275659.1 Arthrospira (Spirulina) maxima CS-328 PC 1 Blastp 220 09-26-2011
NblB family CwatDRAFT_3505 ZP_00516591.1 Crocosphaera watsonii WH8501 PC+PEI Blastp 219 09-26-2011
NblB family cce_3386 YP_001804800.1 Cyanothece sp. ATCC51142 PC 1 N-term shortened (15 aa removed: MRWFLVNILIYPFII) 219 09-13-2012
NblB family PCC7424_2563 YP_002377847.1 Cyanothece sp. PCC7424 PC+PEI 2 Blastp 220 09-26-2011
NblB family Cyan7425_1432 YP_002482166.1 Cyanothece sp. PCC7425 PC 1 Blastp 220 09-26-2011
NblB family PCC8801_0932 YP_002371165.1 Cyanothece sp. PCC8801 PC+PEI 2 Blastp 220 09-26-2011
NblB family Cyan8802_0959 YP_003136728.1 Cyanothece sp. PCC8802 PC 1 Blastp 220 09-26-2011
NblB family CY0110_12007 ZP_01731445.1 Cyanothece sp. CCY0110 PC 1 Blastp 219 09-26-2011
NblB family Cyan7822_3518 YP_003888735.1 Cyanothece sp. PCC7822 PC+PEI 2 Blastp 220 09-26-2011
NblB family gvip306 NP_925180.1 Gloeobacter violaceus PCC7421 PC+PEI 2 Blastp 215 11-24-2011
NblB family MC7420_7663 ZP_05023685.1 Microcoleus chthonoplastes PCC7420 PC+PEC N-term shortened (11 aa removed: MSDYLLLNTLQ) 218 09-13-2012
NblB family MAE_14280 YP_001656442.1 Misrcystis aeruginosa NIES-843 PC 1 Blastp 221 09-26-2011
NblB family N9414_09806 ZP_01630150.1 Nodularia spumigena CCY9414 PC 1 Blastp 220 09-26-2011
NblB family Npun_R5793 YP_001869034.1 Nostoc punctiforme ATCC29133 (PCC73102) PC+PEI 2 Blastp 221 09-26-2011
NblB family Synpcc7942_1823 YP_400840.1 Synechococcus elongatus PCC7942 PC 1 219 08-28-2012
NblB family syc2271_d YP_172981.1 Synechococcus elongatus PC 1 Blastp 221 09-26-2011
NblB family CYB_0185 YP_476448.1 Synechococcus sp. JA-2-3B'a(2-13) PC 1 Blastp 227 09-26-2011
NblB family CYA_2789 YP_476154.1 Synechococcus sp. JA-3-3Ab PC 1 Blastp 226 09-26-2011
NblB family tlr0766 NP_681555.1 Thermosynechococcus elongatus BP-1 PC 1 Blastp 226 09-26-2011
NblB family Tery_2239 YP_721941.1 Trichodesmium erythraeum IMS101 PC+PEI Blastp 220 09-26-2011
NblB family CRD_02854 ZP_06306309.1 Raphidiopsis brookii D9 PC 1 226 10-28-2011
NblB family CRC_01060 ZP_06307576.1 Cylindrospermopsis raciborskii CS-505 PC 1 226 10-28-2011
NblB family OSCI_3860033 ZP_07113489.1 Oscillatoria sp. PCC6506 (PCC9029/ATCC29081 /UTEX 1547) PC 1 220 10-28-2011
NblB family LYNGBM3L_66920 ZP_08431562.1 Lyngbya majuscula 3L PC+PEI 2 220 10-28-2011
NblB family MicvaDRAFT_5366 ZP_08492865.1 Microcoleus vaginatus FGP-2 PC 1 224 10-28-2011
NblB family NIES39_D03910 BAI89809.1 Arthrospira (Spirulina) platensis NIES-39 PC 1 220 10-28-2011
NblB family IPF_2775 CAO89282.1 Microcystis aeruginosa PCC7806 PC 1 221 10-28-2011
NblB family FJSC11DRAFT_0382 ZP_08984176.1 Fischerella sp. (Mastigocladus laminosus) JSC-11 PC+PEC 221 11-24-2011
NblB family GL6909_3251 Gloeothece sp. PCC6909/1 PC+PEI 2 Truncated because the original orf was fused with another 220 11-30-2011
NblB family Cy51472DRAFT_2453 ZP_08973657.1 Cyanothece sp. ATCC51472 PC 1 219 01-10-2012
NblB family AplaP_010100017289 ZP_06383430.1 Arthrospira (Spirulina) platensis Paraca PC 1 N-term shortened (18 aa removed: MRVAPDLNRQQLLNCLTK) 220 09-13-2012
NblB family CWATWH0003_3083 EHJ12197.1 Crocosphaera watsonii WH0003 PC+PEI 219 02-22-2012
NblB family MICAI_3110003 ZP_10229074.1 Microcystis sp. T1-4 PC+PEI 2 221 08-22-2012
NblB family MICAG_200023 CCI23270.1 Microcystis aeruginosa PCC9808 PC 1 221 08-22-2012
NblB family MICAB_4960020 CCH98552.1 Microcystis aeruginosa PCC9717 PC 1 221 08-23-2012
NblB family MICAK_580022 CCI38703.1 Microcystis aeruginosa PCC9701 PC 1 221 08-23-2012
NblB family MICAC_3690016 CCI02719.1 Microcystis aeruginosa PCC9443 PC 1 221 08-23-2012
NblB family MICAD_2940015 CCI08016.1 Microcystis aeruginosa PCC7941 PC 1 221 08-23-2012
NblB family Cylst_5091 YP_007149816.1 Cylindrospermum stagnale PCC7417 PC+PEC 220 04-24-2013
NblB family Anacy_2696 YP_007157043.1 Anabaena cylindrica PCC7122 PC+PEC 220 04-24-2013
NblB family Nos7524_4874 YP_007078199.1 Nostoc sp. PCC7524 PC+PEC 220 04-24-2013
NblB family Mic7113_4080 YP_007123190.1 Microcoleus sp. PCC7113 PC+PEI 2 218 04-24-2013
NblB family Osc7112_0710 YP_007113716.1 Oscillatoria nigro-viridis PCC7112 PC+PEI 2 224 04-24-2013
NblB family ZP_20934124 ZP_20934124.1 Microcystis aeruginosa TAIHU98 PC 1 221 04-24-2013
NblB family Syn7509DRAFT_00041170 ZP_21039471.1 Synechocystis sp. PCC7509 PC 220 04-24-2013
NblB family Ple7327_1847 YP_007080751.1 Pleurocapsa sp. PCC7327 PC+PEI 219 04-24-2013
NblB family Lepto7376_0558 YP_007069818.1 Leptolyngbya sp. PCC7376 PC+PEI 218 04-24-2013
NblB family Xen7305DRAFT_00012810 ZP_21056844.1 Xenococcus sp. PCC7305 PC+PEI 219 04-24-2013
NblB family Glo7428_4688 YP_007130281.1 Gloeocapsa sp. PCC7428 PC 223 04-24-2013
NblB family Chro_0989 YP_007090391.1 Chroococcidiopsis thermalis PCC7203 PC+PEC 219 04-24-2013
NblB family Riv7116_0216 YP_007053370.1 Rivularia sp. PCC7116 PC+PEC 218 04-24-2013
NblB family GLO73106DRAFT_00006030 ZP_21052179.1 Gloeocapsa sp. PCC73106 PC+PEI 218 04-24-2013
NblB family PCC7418_1214 YP_007167630.1 Halothece sp. PCC7418 PC 224 04-24-2013
NblB family ZP_18908692 ZP_18908692.1 Leptolyngbya sp. PCC7375 PC+PEI 2 223 04-24-2013
NblB family Cyast_1913 YP_007165517.1 Cyanobacterium stanieri PCC7202 PC 221 04-24-2013
NblB family Dacsa_1202 YP_007171258.1 Dactylococcopsis salina PCC8305 224 04-24-2013
NblB family Cal7507_1540 YP_007064834.1 Calothrix sp. PCC7507 PC+PEC 220 04-29-2013
NblB family Sta7437_3389 YP_007133861.1 Stanieria cyanosphaera PCC7437 PC+PEI 220 04-29-2013
NblB family MICCA_930006 ZP_18815469.1 Microcystis aeruginosa PCC9432 PC 1 221 04-29-2013
NblB family Nos7107_4026 YP_007051729.1 Nostoc sp. PCC7107 PC+PEC 221 04-29-2013
NblB family Cri9333_0875 YP_007141302.1 Crinalium epipsammum PCC9333 PC 221 04-29-2013
NblB family Cal6303_0988 YP_007136025.1 Calothrix sp. PCC6303 PC+PEI 2 218 04-29-2013
NblB family Cyan10605_2137 YP_007162269.1 Cyanobacterium aponimum PCC10605 219 04-29-2013
NblB family Oscil6304_1780 YP_007085378.1 Oscillatoria acuminata PCC6304 (SAG 1449-3) PC 222 04-29-2013
NblB family GEI7407_0128 YP_007107685.1 Geitlerinema sp. PCC7407 PC 220 04-29-2013
NblB family Lep6406DRAFT_00023300 ZP_21046418.1 Leptolyngbya sp. PCC6406 PC+PEC 220 04-29-2013
NblB family Syn6312_0129 YP_007059926.1 Synechococcus sp. PCC6312 PC 222 04-29-2013
Cha6605_0245 YP_007095074.1 Chamaesiphon minutus PCC6605 PC+PEI 213 04-29-2013
NblB family LepboDRAFT_1028 Leptolyngbya boryana PCC6306 PC 219 06-11-2013
NblB family Fis9431DRAFT_1583 Fischerella sp. PCC9431 PC+PEC 221 06-12-2013
NblB family FIS9605DRAFT_03310 Fischerella sp. PCC9605 PC+PEC 220 06-12-2013
NblB family FisPCC73103_7578 Fischerella muscicola PCC73103 (SAG 1427-1) PC+PEC 221 06-12-2013
NblB family Scytonema_PCC7110_joined_5306 Scytonema hofmanni PCC7110 PC+PEC 226 06-12-2013
NblB family Osc10802DRAFT_5396 Oscillatoria sp. PCC10802 PC+PEI 336 06-12-2013
NblB family PCC9339DRAFT_01092 Fischerella sp. PCC9339 PC+PEC 221 06-12-2013
NblB family Ana7108_1853 Anabaena sp. PCC7108 PC+PEC 218 06-12-2013
NblB family Chloroglopsis_PCC9212_joined_453 Chlorogloeopsis sp. PCC9212 PC+PEC 221 06-12-2013
NblB family UYC_04806 Chlorogloeopsis fritschii PCC6912 PC+PEC 221 06-12-2013
NblB family FisPCC7414_2854 Fischerella muscicola PCC7414 PC+PEC 221 06-12-2013
NblB family Fischerella_sp._PCC7521_5286 Fischerella thermalis PCC7521 PC+PEC 221 06-12-2013
NblB family Syn7502_00033 YP_007104343.1 Synechococcus sp. PCC7502 PC 219 06-20-2013
NblB family Pse7367_2182 YP_007102874.1 Pseudanabaena sp. PCC7367 PC+PEI 241 06-20-2013
NblB family Pse7429DRAFT_0756 ZP_21065042.1 Pseudanabaena sp. (biceps) PCC7429 PC 225 06-20-2013

Model strain Model strains, Marine strains

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