CC9311 strain

Subcluster: 5.1

Clade/Ecotype: I

Subclade: Ia

Phycobiliprotein types: PC+PEI+PEII

Pigment type: 3dA/CA4-A

Habitat: marine

Refseq record: NC_008319

Genome status: complete

Sequencing center: JGI

Dufresne et al., 2008. Unraveling the genomic mosaic of a ubiquitous genus of marine cyanobacteria Genome Biol, 9, R90.
Humily et al., 2013. A gene island with two possible configurations is involved in chromatic acclimation in marine Synechococcus PLoS One, 8, e84459.
Palenik et al., 2006. Genome sequence of Synechococcus CC9311: Insights into adaptation to a coastal environment Proc Natl Acad Sci USA, 103, 13555-13559.
Six et al., 2007. Diversity and evolution of phycobilisomes in marine Synechococcus spp.: a comparative genomics study Genome Biol, 8, R259.

Showing only sure genes

Gene	Locus tag	Genbank	Remark	Length	Last change
CpcS-II subfamily	sync_2487	YP_731681.1		203	09-26-2011
CpeT family	sync_0509	YP_729736.1		208	09-26-2011
CpeS-II subfamily	sync_0510	YP_729737.1		179	09-26-2011
CpeU-II subfamily	sync_0492	YP_729719.1		200	11-25-2011
CpeY family	sync_0499	YP_729726.1		442	09-26-2011
CpeZ family	sync_0500	YP_729727.1	N-term shortened (15aa removed by FP: LLLSPAKIVKSSSCV)	208	09-26-2011
MpeU family	sync_0501	YP_729728.1		291	10-25-2011
MpeV family	sync_0497	YP_729724.1		301	04-20-2023
MpeY family	sync_0506	YP_729733.1		398	09-26-2011
MpeZ family	sync_2228	YP_731426.1		409	09-26-2011
RpcT family	sync_0487	YP_729714.1		196	09-26-2011
IaiH family	sync_2351	YP_731548.1		269	10-26-2011
CotB homologs 1 family	sync_0128	YP_729365.1		208	09-26-2011
RpcE subfamily	sync_0486	YP_729713.1	N-term extended	265	09-28-2012
RpcF subfamily	sync_0485	YP_729712.1		209	09-26-2011
CpcU-II subfamily	sync_0774	YP_729988.1		158	11-04-2011

Model strains, Marine strains

Last update: 19 Jan 2018 15:08:56