CyanoLyase

CpeU family

Description

Not biochemically characterized yet. Given its gene environment, it is possibly a PEI:PEB lyase, but the cysteinyl residue it chromophorylates is unknown yet. In marine Synechococcus, it may also act on the corresponding site of PEII, at least in low PUB strains.

References

  • Wiethaus et al., 2010. CpeS is a lyase specific for attachment of 3Z-PEB to Cys82 of {beta}-phycoerythrin from Prochlorococcus marinus MED4 J Biol Chem, 285, 37561-37569.

Gene Locus tag Genbank Species Strain PBP in rods Pigment type Remark Length Last change
CpeU-I subfamily S7335_5494 ZP_05039049.1 Synechococcus sp. PCC7335 PC+PEI CA3 185 11-25-2011
CpeU-I subfamily PCC7424_5736 YP_002381031.1 Cyanothece sp. PCC7424 PC+PEI 2 197 11-25-2011
CpeU-I subfamily PCC8801_4521 YP_002364799.1 Cyanothece sp. PCC8801 PC+PEI 2 194 11-25-2011
CpeU-I subfamily Cyan7822_4040 YP_003889240.1 Cyanothece sp. PCC7822 PC+PEI 2 196 11-25-2011
CpeU-I subfamily glr1259 NP_924205.1 Gloeobacter violaceus PCC7421 PC+PEI 2 197 11-25-2011
CpeU-I subfamily GL6909_3539 Gloeothece sp. PCC6909/1 PC+PEI 2 190 11-25-2011
CpeU-I subfamily Npun_R0731 YP_001864426.1 Nostoc punctiforme ATCC29133 (PCC73102) PC+PEI 2 191 11-25-2011
CpeU-I subfamily Tery_4111 YP_723592.1 Trichodesmium erythraeum IMS101 PC+PEI 193 11-25-2011
CpeU-I subfamily LYNGBM3L_55920 ZP_08427738.1 Lyngbya majuscula 3L PC+PEI 2 197 11-25-2011
CpeU-I subfamily AAQ63051 AAQ63051.1 Fremyella diplosiphon (Tolypothrix sp. / Calothrix sp.) Fd33 (UTEX481/PCC7601) PC+PEI CA3 orf2 in pebAB operon. N-term shortened (14 aa removed: MKCEVSSHFIRGAV) 195 09-16-2012
CpeU-I subfamily MICAI_380008 ZP_10229445.1 Microcystis sp. T1-4 PC+PEI 2 196 08-22-2012
CpeU-I subfamily Ple7327_2703 YP_007081540.1 Pleurocapsa sp. PCC7327 PC+PEI 176 04-22-2013
CpeU-I subfamily GLO73106DRAFT_00035880 ZP_21049296.1 Gloeocapsa sp. PCC73106 PC+PEI 181 04-24-2013
CpeU-I subfamily Ple7327_1060 YP_007080032.1 Pleurocapsa sp. PCC7327 PC+PEI 195 04-24-2013
CpeU-I subfamily Mic7113_4742 YP_007123821.1 Microcoleus sp. PCC7113 PC+PEI 2 204 04-24-2013
CpeU-I subfamily Lepto7376_3000 YP_007072075.1 Leptolyngbya sp. PCC7376 PC+PEI 191 04-24-2013
CpeU-I subfamily ZP_18907671 ZP_18907671.1 Leptolyngbya sp. PCC7375 PC+PEI 2 196 04-24-2013
CpeU-I subfamily Cha6605_4060 YP_007098543.1 Chamaesiphon minutus PCC6605 PC+PEI 186 04-29-2013
CpeU-I subfamily Sta7437_0247 YP_007130830.1 Stanieria cyanosphaera PCC7437 PC+PEI 187 04-29-2013
CpeU-I subfamily Cal6303_1003 YP_007136040.1 Calothrix sp. PCC6303 PC+PEI 2 202 04-29-2013
CpeU-I subfamily Xen7305DRAFT_00018880 ZP_21056337.1 Xenococcus sp. PCC7305 PC+PEI 187 04-29-2013
CpeU-I subfamily Osc7112_1019 YP_007113993.1 Oscillatoria nigro-viridis PCC7112 PC+PEI 2 196 04-29-2013
CpeU-I subfamily Pse7367_3939 YP_007083590.1 Pseudanabaena sp. PCC7367 PC+PEI 197 04-29-2013
CpeU-I subfamily Osc10802DRAFT_3769 Oscillatoria sp. PCC10802 PC+PEI 198 06-12-2013
CpeU-II subfamily sync_0492 YP_729719.1 Synechococcus sp. CC9311 PC+PEI+PEII 3d/CA4 200 11-25-2011
CpeU-II subfamily Syncc9605_0424 YP_380755.1 Synechococcus sp. CC9605 PC+PEI+PEII 3c 203 11-25-2011
CpeU-II subfamily SH8109_0086 ZP_05788514.1 Synechococcus sp. WH8109 PC+PEI+PEII 3b 203 11-25-2011
CpeU-II subfamily SYNW2019 NP_898110.1 Synechococcus sp. WH8102 PC+PEI+PEII 3c 204 11-25-2011
CpeU-II subfamily Syncc9902_1905 YP_377906.1 Synechococcus sp. CC9902 PC+PEI+PEII 3d/CA4 205 11-25-2011
CpeU-II subfamily BL107_08896 ZP_01469882.1 Synechococcus sp. BL107 PC+PEI+PEII 3d/CA4 N-term extended (8 aa added) 205 09-17-2012
CpeU-II subfamily SynWH7803_0483 YP_001224206.1 Synechococcus sp. WH7803 PC+PEI+PEII 3a possible alternative start would make the sequence 2 aa longer (MP) 201 09-17-2012
CpeU-II subfamily WH7805_06731 ZP_01123346.1 Synechococcus sp. WH7805 PC+PEI 2 N-term extended (8 aa added) 193 09-17-2012
CpeU-II subfamily RS9916_40166 ZP_01473076.1 Synechococcus sp. RS9916 PC+PEI+PEII 3d/CA4 N-term extended (10 aa added) 208 09-17-2012
CpeU-II subfamily SynRCC307_2060 YP_001228316.1 Synechococcus sp. RCC307 PC+PEI+PEII 3b 202 11-25-2011
CpeU-II subfamily SCB02_010100004388 ZP_07970147.1 Synechococcus sp. CB0205 PC+PEI 2 MIVEASFVVPMS not present in refseq 206 11-25-2011
CpeU-II subfamily Syn8016DRAFT_2746 ZP_08957399.1 Synechococcus sp. WH8016 PC+PEI+PEII 3a N-term shortened by 22aa (METVPTFQSNGPMTVSDSSLEV) 204 11-25-2011
CpeU-II subfamily SynWH8020_CpeUII AAA27342.1 Synechococcus sp. WH8020 PC+PEI+PEII 3d/CA4 ORF200 in Wilbanks et al. (1993) 200 08-27-2012

Model strain Model strains, Marine strains

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