PCC7421 strain

[fasta] [gff] [show all]

Lineage

Prokarya

Cyanobacteria

Chroococcales

Gloeobacter

violaceus

Strain information

Phycobiliprotein types: PC+PEI

Pigment type: 2

Habitat: Rock

Remark: The chromophorylation of the PE of this strain is controversial. Indeed Bryant et al. (1981) reported that the alpha subunit would bind 3 PEB and the beta subunit 3 PEB and one PUB, whereas CpeA and CpeB sequences have no additional binding sites as other PEs. No obvious candidate for a lyase-isomerase was found in this genome.

Genome sequence

Refseq record: NC_005125

Genome status: complete

Sequencing center: Kazusa

References

Bryant et al., 1981. Characterization of the biliproteins of Gloeobacter violaceus: Chromophore content of a cyanobacterial phycoerythrin carrying phycourobilin chromophore Archiv Microbiol, 129, 190- 198.
Nakamura et al., 2003. Complete genome structure of Gloeobacter violaceus PCC 7421, a cyanobacterium that lacks thylakoids DNA Res, 10, 137-145.

Showing only sure genes

Gene	Locus tag	Genbank	Remark	Length	Last change
CpcT family	glr1182	NP_924128.1		202	11-01-2012
CpcU-I subfamily	glr1614	NP_924560.1		212	09-26-2011
CpcV family	gll1531	NP_924477.1		174	09-26-2011
CpeT family	gvip163	NP_924139.1		203	11-24-2011
CpeS-I subfamily	gvip162	NP_924138.1		180	11-24-2011
CpeU-I subfamily	glr1259	NP_924205.1		197	11-25-2011
CpeY family	gvip158	NP_924134.1		428	11-24-2011
CpeZ family	gvip157	NP_924133.1		204	11-24-2011
CpeF family	gll1255	NP_924201.1		290	10-25-2011
IaiH family	gll3007	NP_925953.1		240	10-26-2011
CotB family	gvip178	NP_924203.1		217	11-24-2011
CpcE-I subfamily	gvip185	NP_924214.1		247	12-06-2011
CpcF-I subfamily	gvip186	NP_924215.1		193	12-06-2011
T homologs family	glr1538	NP_924484.1		183	09-26-2011
NblB family	gvip306	NP_925180.1	Blastp	215	11-24-2011
CpcS homologs family	gll1024	NP_923970.1	N-term shortened (10 aa removed)	185	08-29-2012

Model strains, Marine strains

Last update: 25 Sep 2012 15:58:24