MpeY family
Description
The mpeY gene is present in the "PEII subregion" of the "phycobilisome rod gene region" of all PEII-containing marine Synechococcus strains belonging to pigment types 3a and 3dA (Sanfilippo et al. 2019; Grébert et al. 2021); it is found at the same position as mpeQ in the phycobilisome gene region of pigment types 3c and 3dB (Grébert et al. 2021, 2022). MpeW was biochemically characterized as a PEB:Cys-83 alpha-PEII lyase in the pigment 3dA Synechococcus strain RS9916 (Sanfilippo et al. 2019). In Synechococcus pigment type 3a strains, this position therefore constitutively binds a PEB, whereas in pigment type 3dA strains, this position binds a PUB in blue light and a PEB in green light, as the result of a competition between MpeY and the PEB lyase-isomerase MpeZ, which is specifically and strongly activated in blue light but repressed in green light (Shukla et al. 2012; Humily et al. 2013).
Motif
A motif characterising this family is available.
References
- Grébert et al., 2022. Diversity and evolution of pigment types in marine Synechococcus cyanobacteria Genome Biol Evol, 14, evac035.
- Grébert et al., 2021. Molecular bases of an alternative dual-enzyme system for light color acclimation of marine Synechococcus cyanobacteria Proc Natl Acad Sci USA, 118, e2019715118.
- Humily et al., 2013. A gene island with two possible configurations is involved in chromatic acclimation in marine Synechococcus PLoS One, 8, e84459.
- Sanfilippo et al., 2019. Interplay between differentially expressed enzymes contributes to light color acclimation in marine Synechococcus Proc Natl Acad Sci USA, 116, 6457-6462.
- Shukla et al., 2012. Phycoerythrin-specific bilin lyase-isomerase controls blue-green chromatic acclimation in marine Synechococcus Proc Natl Acad Sci USA, 49, 20136-20141.
Showing only sure genes
Gene | Locus tag | Genbank | Species | Strain | PBP in rods | Pigment type | Remark | Length | Last change |
---|---|---|---|---|---|---|---|---|---|
MpeY family | sync_0506 | YP_729733.1 | Synechococcus sp. | CC9311 | PC+PEI+PEII | 3dA/CA4-A | 398 | 09-26-2011 | |
MpeY family | Syncc9902_1892 | YP_377893.1 | Synechococcus sp. | CC9902 | PC+PEI+PEII | 3dA/CA4-A | 398 | 09-26-2011 | |
MpeY family | BL107_08961 | ZP_01469895.1 | Synechococcus sp. | BL107 | PC+PEI+PEII | 3dA/CA4-A | 400 | 09-26-2011 | |
MpeY family | SynWH7803_0494 | YP_001224217.1 | Synechococcus sp. | WH7803 | PC+PEI+PEII | 3a | 397 | 09-26-2011 | |
MpeY family | RS9916_40241 | ZP_01473091.1 | Synechococcus sp. | RS9916 | PC+PEI+PEII | 3dA/CA4-A | 398 | 09-26-2011 | |
MpeY family | SynRCC307_2047 | YP_001228303.1 | Synechococcus sp. | RCC307 | PC+PEI+PEII | 3eA | 398 | 09-26-2011 | |
MpeY family | Syn8016DRAFT_2756 | ZP_08957409.1 | Synechococcus sp. | WH8016 | PC+PEI+PEII | 3aA | 402 | 11-04-2011 |
Model strains, Marine strains
Last update: 21 Apr 2023 7:53:56