PCC6301 strain

Also known as: ATCC 27144

Subcluster: 1.1

Phycobiliprotein types: PC

Pigment type: 1

Habitat: freshwater

Remark: co-identical with PCC7942 except for a 186 bp inversion (Sugita et al, 2007)

Refseq record: NC_006576

Sequencing center: Nagoya University

Sugita et al., 2007. Complete nucleotide sequence of the freshwater unicellular cyanobacterium Synechococcus elongatus PCC 6301 chromosome: gene content and organization Photosynth Res, 93, 55-67.

Showing only sure genes

Gene	Locus tag	Genbank	Remark	Length	Last change
CpcS-I subfamily	syc2064_d	YP_172774.1		193	11-25-2011
CpcT family	syc0738_d	YP_171448.1		197	09-26-2011
CpcV family	syc1149_c	YP_171859.1		183	09-26-2011
IaiH family	syc2339_d	YP_173049.1		250	10-26-2011
CpcE-I subfamily	syc0494_c	YP_171204.1		273	09-26-2011
CpcF-I subfamily	syc0493_c	YP_171203.1		207	09-26-2011
T homologs family	syc0764_d	YP_171474.1		197	09-26-2011
NblB family	syc2271_d	YP_172981.1	Blastp	221	09-26-2011
CpcS homologs family	syc0383_d	YP_171093.1		185	11-16-2011
CpcU-I subfamily	syc1345_c	YP_172055.1	N-term possibly 12 aa too long (MGDSKGRVASAA). Fairly low blast score to other CpcU-I sequences.	180	09-16-2012
CotB homologs 2 family	syc2370_d	YP_173080.1		234	11-24-2011

Model strains, Marine strains

Last update: 28 Aug 2012 14:27:09