RpcG family
[fasta] [only sure] [only unsure]
Description
Fusion protein with C-terminal and N-terminal parts showing similarity to PecE and PecF, respectively, but with different function in vivo: RpcG attaches a PEB and isomerizes it to PUB at Cys-84 of alpha-PC (Blot et al. 2009). Found only in some marine cyanobacteria (Grébert et al. 2022).
Motif
A motif characterising this family is available.
References
- Blot et al., 2009. Phycourobilin in Trichromatic Phycocyanin from Oceanic Cyanobacteria Is Formed Post-translationally by a Phycoerythrobilin Lyase-Isomerase J Biol Chem, 284, 9290-9298.
- Grébert et al., 2022. Diversity and evolution of pigment types in marine Synechococcus cyanobacteria Genome Biol Evol, 14, evac035.
| Gene | Locus tag | Genbank | Species | Strain | PBP in rods | Pigment type | Remark | Length | Last change |
|---|---|---|---|---|---|---|---|---|---|
| RpcG family | Syncc9605_0418 | YP_380749.1 | Synechococcus sp. | CC9605 | PC+PEI+PEII | 3c | 492 | 09-26-2011 | |
| RpcG family | SYNW2025 | NP_898116.1 | Synechococcus sp. | WH8102 | PC+PEI+PEII | 3c | 466 | 09-26-2011 | |
| RpcG family | BL107_08866 | ZP_01469876.1 | Synechococcus sp. | BL107 | PC+PEI+PEII | 3dA/CA4-A | 459 | 09-26-2011 | |
| RpcG family | RS9916_40131 | ZP_01473069.1 | Synechococcus sp. | RS9916 | PC+PEI+PEII | 3dA/CA4-A | 467 | 09-26-2011 | |
| RpcG family | CwatDRAFT_0661 | ZP_00518422.1 | Crocosphaera watsonii | WH8501 | PC+PEI | Although this genome also contains rpcE/F genes, WH8501 has been shown that alpha-PC attaches a PUB (Swanson et al. 1991). So the role of rpcE/F genes is unclear. | 473 | 08-30-2012 |
Model strains, Marine strains
Last update: 20 Apr 2023 15:54:10
