CyanoLyase

JSC-11 strain

Lineage

  • Prokarya
    • Cyanobacteria
      • Stigonematales
        • Fischerella
          • sp. (Mastigocladus laminosus)

Strain information

Phycobiliprotein types: PC+PEC

Habitat: freshwater

Remark: Close to Fischerella sp. PCC 7603 in which CpcE/F (Zhao et al, 2006) as well as PecE and/or PecF (Storf et al. 2001, Zhao et al., 2005, Bohm et al, 2007) have been characterized

Genome sequence

Refseq record: NZ_AGIZ00000000

Genome status: incomplete (34 scaffolds)

Sequencing center: JGI

References

  • Bohm et al., 2007. Biliprotein chromophore attachment - Chaperone-like function of the PecE subunit of alpha-phycoerythrocyanin lyase J Biol Chem, 282, 25357-25366.
  • Storf et al., 2001. Chromophore attachment to biliproteins: specificity of PecE/PecF, a lyase-isomerase for the photoactive 3(1)-cys-alpha 84-phycoviolobilin chromophore of phycoerythrocyanin Biochemistry, 40, 12444-12456.
  • Zhao et al., 2006. Chromophore attachment in phycocyanin - Functional amino acids of phycocyanobilin-alpha-phycocyanin lyase and evidence for chromophore binding FEBS J, 273, 1262-1274.
  • Zhao et al., 2005. Amino acid residues associated with enzymatic activities of the isomerizing phycoviolobilin-lyase PecE/F Biochemistry, 44, 8126-8137.

Showing only sure genes

Gene Locus tag Genbank Remark Length Last change
CpcS-III subfamily FJSC11DRAFT_1071 ZP_08984865.1 187 11-04-2011
CpcT family FJSC11DRAFT_1806 ZP_08985600.1 196 11-04-2011
CpcV family FJSC11DRAFT_2876 ZP_08986670.1 178 11-04-2011
PecE family FJSC11DRAFT_0798 ZP_08984592.1 257 11-04-2011
PecF family FJSC11DRAFT_0797 ZP_08984591.1 209 11-04-2011
IaiH family FJSC11DRAFT_1220 ZP_08985014.1 252 11-04-2011
CotB homologs 2 family FJSC11DRAFT_1072 ZP_08984866.1 226 11-04-2011
CpcE-I subfamily FJSC11DRAFT_0792 ZP_08984586.1 276 12-06-2011
CpcF-I subfamily FJSC11DRAFT_0791 ZP_08984585.1 205 12-06-2011
NblB family FJSC11DRAFT_0382 ZP_08984176.1 221 11-24-2011
T homologs family FJSC11DRAFT_4093 ZP_08987885.1 198 11-24-2011
L8106_16949 homologs family FJSC11DRAFT_0884 ZP_08984678.1 404 12-05-2011
L8106_22089 homologs family FJSC11DRAFT_4556 ZP_08988348.1 333 12-06-2011

Model strain Model strains, Marine strains

Biogenouest Station biologique de Roscoff ANR

Copyright © 2005-2012 Biogenouest® - Legal notice - Contact : Contact GenOuest

Hosted by the GenOuest bioinformatics platform