CyanoLyase

S/U clan - Phycobilin lyases

Description

Members of this group encompass characterized phycobilin lyases as well as enzymes that are uncharacterized so far.

Showing only unsure genes

Gene Locus tag Genbank Species Strain PBP in rods Pigment type Remark Length Last change
CpcS family AM1_4215 YP_001518512.1 Acaryochloris marina MBIC11017 (AM1) PC 1 1st copy, strange position in phylogeny. By blast: closer from CpcSI. 197 08-20-2012
CpcS family AM1_C0217 YP_001521653.1 Acaryochloris marina MBIC11017 (AM1) PC 1 2nd copy,strange position in phylogeny. By blast: closer from CpcSI. Located on preb3 plasmid. 208 08-20-2012
CpcS family CMR092C Cyanidioschyzon merolae 10D PC 1 long N-term compared to cyanobacterial CpcS sequences, found by tblastn 405 02-21-2012
CpcS-I subfamily gvip161 NP_924137.1 Gloeobacter violaceus PCC7421 PC+PEI 2 strange position in phylogenetic trees 201 01-18-2018
CpcS-I subfamily Npun_F3809 YP_001867136.1 Nostoc punctiforme ATCC29133 (PCC73102) PC+PEI 2 CpcSIII in Schluchter et al., 2010? 206 09-26-2011
CpcS-I subfamily ACCM5_010100032969 ZP_09252138.1 Acaryochloris sp. CCMEE5410 APC only 196 08-24-2012
CpcS-III subfamily Mic7113_0798 YP_007120112.1 Microcoleus sp. PCC7113 PC+PEI 2 Found both CpcS-I and CpcS-III in this strain? 188 06-20-2013
CpcU-I subfamily LYNGBM3L_17960 ZP_08426426.1 Lyngbya majuscula 3L PC+PEI 2 Protomata tells it is CpcU.
Blast tells it is CpcSIII (but with a 17aa gap)
190 10-19-2011
CpcU-I subfamily AM1_5938 YP_001520196.1 Acaryochloris marina MBIC11017 (AM1) PC 1 N-term extended (22 aa added). Low blast and protomatch score with other CpcU-I sequences. 184 09-16-2012
CpcU-I subfamily ACCM5_010100021921 ZP_09249963.1 Acaryochloris sp. CCMEE5410 APC only 184 01-24-2012
CpcU-I subfamily PCC7418_3771 YP_007170089.1 Halothece sp. PCC7418 PC 179 06-20-2013
CpcU-I subfamily Dacsa_0519 YP_007170660.1 Dactylococcopsis salina PCC8305 190 06-20-2013
CpcU-II subfamily CPCC7001_xx Cyanobium sp. PCC7001 PC 1 Found using tblastn. Orf not detected in refseq. 166 02-21-2012
CpeS-I subfamily gi|145967347|gb|ABP99029.1| ABP99029.1 Fremyella diplosiphon (Tolypothrix sp. / Calothrix sp.) Fd33 (UTEX481/PCC7601) PC+PEI CA3 N-term shortened (6 aa removed: METKVL). C-term much longer than in other CpeS-I sequences and also includes a specific sequence at between aa 103-112. 215 09-17-2012

Model strain Model strains, Marine strains

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